RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 HTRA4P83105 476 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 SSRP1Q08945 709 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 MGAT3Q09327 533 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 TRIM22Q8IYM9 498 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 FBXO22Q8NEZ5 403 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 TRAPPC12Q8WVT3 735 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 KHSRPQ92945 711 aaKnown RBP eCLIP17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 ZNF577Q9BSK1 485 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 C1QTNF1Q9BXJ1 281 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 IFIH1Q9BYX4 1025 aaKnown RBP17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 FAM49AQ9H0Q0 323 aaPredicted RBP17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 PDRG1Q9NUG6 133 aa17.86■□□□□ 0.45
CCDC88B-205ENST00000472524 IPO5O00410 1097 aaKnown RBP17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 UPP2O95045 317 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 ATG7O95352 703 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 TTC3P53804 2025 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 NLRP5P59047 1200 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 SETQ01105 290 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 RALGAPA2Q2PPJ7 1873 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 PRR16Q569H4 304 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 PLPPR4Q7Z2D5 763 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 RPAINQ86UA6 219 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 SP7Q8TDD2 431 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 APBB2Q92870 758 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 ZNF274Q96GC6 653 aaPredicted RBP17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 CDY2AQ9Y6F7 541 aa17.85■□□□□ 0.45
CCDC88B-205ENST00000472524 BRWD1Q9NSI6 2320 aa17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 POTEB3A0JP26 581 aa17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 MRPS6P82932 125 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 FAM160B1Q5W0V3 765 aa17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 POTEBQ6S5H4 581 aa17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 ABHD15Q6UXT9 468 aa17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 CCDC60Q8IWA6 550 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 TNPO1Q92973 898 aaKnown RBP17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 UBE2ZQ9H832 354 aaPredicted RBP17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 CD320Q9NPF0 282 aa17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 SH3GLB2Q9NR46 395 aa17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 TCEAL9Q9UHQ7 104 aa17.84■□□□□ 0.45
CCDC88B-205ENST00000472524 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 DHX15O43143 795 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 TMEM62Q0P6H9 643 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 LPIN1Q14693 890 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 ERICH6BQ5W0A0 696 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 MIS18BP1Q6P0N0 1132 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 PDXDC2PQ6P474 469 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 CPLX2Q6PUV4 134 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 TOP1MTQ969P6 601 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 YME1L1Q96TA2 773 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 ZNF302Q9NR11 478 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 NCOR1O75376 2440 aa17.83■□□□□ 0.44
CCDC88B-205ENST00000472524 IGKV6D-21A0A0A0MT36 114 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 DEXIO95424 95 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 KCNA5P22460 613 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 SLC26A2P50443 739 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 EPC2Q52LR7 807 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 FBXO47Q5MNV8 452 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 SWSAP1Q6NVH7 229 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 AIFM3Q96NN9 605 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 TBC1D22BQ9NU19 505 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 PCDHA2Q9Y5H9 948 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 TRPV2Q9Y5S1 764 aa17.82■□□□□ 0.44
CCDC88B-205ENST00000472524 M0QZ92 97 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 HBP1O60381 514 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 RPLP2P05387 115 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 CIITAP33076 1130 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 LEXMQ3ZCV2 418 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 IER5Q5VY09 327 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 ZNF746Q6NUN9 644 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 MTHFD1LQ6UB35 978 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 TSHZ1Q6ZSZ6 1077 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 TRMT1LQ7Z2T5 733 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 CKAP2LQ8IYA6 745 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 ATP8B4Q8TF62 1192 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 LENG9Q96B70 501 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 MRPL38Q96DV4 380 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 LRFN3Q9BTN0 628 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 PCDHA4Q9UN74 947 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 MYO7AQ13402 2215 aa17.81■□□□□ 0.44
CCDC88B-205ENST00000472524 ATG2AQ2TAZ0 1938 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 KIAA1671Q9BY89 1806 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 EDIL3O43854 480 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 CD52P31358 61 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 PLA2G5P39877 138 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 KRT76Q01546 638 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 SCRN1Q12765 414 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 BLIDQ8IZY5 108 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 TBCKQ8TEA7 893 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 SLKQ9H2G2 1235 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 SAMM50Q9Y512 469 aa17.8■□□□□ 0.44
CCDC88B-205ENST00000472524 COL1A2P08123 1366 aa17.79■□□□□ 0.44
CCDC88B-205ENST00000472524 SMIM35A0A1B0GVV1 85 aa17.79■□□□□ 0.44
CCDC88B-205ENST00000472524 FAM86C2PA6NEL3 165 aa17.79■□□□□ 0.44
CCDC88B-205ENST00000472524 H3BNC9 293 aa17.79■□□□□ 0.44
CCDC88B-205ENST00000472524 DTNBO60941 627 aa17.79■□□□□ 0.44
CCDC88B-205ENST00000472524 PSAPP07602 524 aa17.79■□□□□ 0.44
CCDC88B-205ENST00000472524 ATP4AP20648 1035 aa17.79■□□□□ 0.44
CCDC88B-205ENST00000472524 KLRC1P26715 233 aa17.79■□□□□ 0.44
CCDC88B-205ENST00000472524 PTPROQ16827 1216 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms