RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	B3GNT8	Q7Z7M8	397 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	FBXO15	Q8NCQ5	510 aa	Predicted RBP	5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	COG1	Q8WTW3	980 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	MZB1	Q8WU39	189 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	DDX11	Q96FC9	970 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	CEP89	Q96ST8	783 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	GCM1	Q9NP62	436 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	WASF3	Q9UPY6	502 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	SPEF1	Q9Y4P9	236 aa		5.25	□□□□□ -1.57
PTCD3-209	ENST00000472044	ZNF839	A8K0R7	811 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	MPIG6B	O95866	241 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	CYP2C8	P10632	490 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	PTGS1	P23219	599 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	THBS2	P35442	1172 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	ITK	Q08881	620 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	MOGS	Q13724	837 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	INAVA	Q3KP66	663 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	SYDE2	Q5VT97	1194 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	CILP2	Q8IUL8	1156 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	PHYKPL	Q8IUZ5	450 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	IGDCC3	Q8IVU1	814 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	FAM26E	Q8N5C1	309 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	DTX3	Q8N9I9	347 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	IGDCC4	Q8TDY8	1250 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	AHCYL2	Q96HN2	611 aa	Known RBP	5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	ZNF496	Q96IT1	587 aa	Predicted RBP	5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	FOXB1	Q99853	325 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	VTA1	Q9NP79	307 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	DLL4	Q9NR61	685 aa		5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	NOC2L	Q9Y3T9	749 aa	Known RBP	5.24	□□□□□ -1.57
PTCD3-209	ENST00000472044	UBA6	A0AVT1	1052 aa	Predicted RBP	5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	GABRD	O14764	452 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	MC3R	P41968	323 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	PFKP	Q01813	784 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	ALDH6A1	Q02252	535 aa	Known RBP	5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	VASN	Q6EMK4	673 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	TMEM132E	Q6IEE7	984 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	LIPI	Q6XZB0	460 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	CBARP	Q8N350	705 aa	Predicted RBP	5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	LINC00482	Q8N8I6	264 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	SMARCC2	Q8TAQ2	1214 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	RTF1	Q92541	710 aa	Known RBP	5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	MAML3	Q96JK9	1138 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	TMEM209	Q96SK2	561 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	ORAI2	Q96SN7	254 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	KRTAP9-2	Q9BYQ4	174 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	GALNT8	Q9NY28	637 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	ARHGAP28	Q9P2N2	729 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	TRHDE	Q9UKU6	1024 aa		5.23	□□□□□ -1.57
PTCD3-209	ENST00000472044	PRAMEF22	A3QJZ6	481 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	NFIB	O00712	420 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	MAF	O75444	373 aa	Predicted RBP	5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	ALDH1L1	O75891	902 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	FBXO21	O94952	628 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	PRL	P01236	227 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	S100B	P04271	92 aa	Predicted RBP	5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	GLDC	P23378	1020 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	DLG4	P78352	724 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	MESP2	Q0VG99	397 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	KLF1	Q13351	362 aa	Predicted RBP	5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	PDCD1	Q15116	288 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	TTC38	Q5R3I4	469 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	PRAMEF18	Q5VWM3	479 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	MCTP1	Q6DN14	999 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	KANSL1	Q7Z3B3	1105 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	HIPK4	Q8NE63	616 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	LMBR1	Q8WVP7	490 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	KCNN1	Q92952	543 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	ACAP3	Q96P50	834 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	BTBD2	Q9BX70	525 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	AMN	Q9BXJ7	453 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	CCDC8	Q9H0W5	538 aa	Predicted RBP	5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	KCNK12	Q9HB15	430 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	INCENP	Q9NQS7	918 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	TOPORS	Q9NS56	1045 aa	Predicted RBP	5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	RBPJL	Q9UBG7	517 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	MSRA	Q9UJ68	235 aa		5.22	□□□□□ -1.57
PTCD3-209	ENST00000472044	KRTAP9-6	A0A140TA67	174 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	TRIM75P	A6NK02	468 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	KDM1A	O60341	852 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	MED14OS	P0DP75	135 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	MC4R	P32245	332 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	EPHB3	P54753	998 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	NCKAP1L	P55160	1127 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	ITGA1	P56199	1179 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	KRT85	P78386	507 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	FOXO4	P98177	505 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	ADAM9	Q13443	819 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	STIL	Q15468	1287 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	SKIDA1	Q1XH10	827 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	ESPNL	Q6ZVH7	1005 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	C7orf31	Q8N865	590 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	KY	Q8NBH2	561 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	CALML6	Q8TD86	181 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	MTMR8	Q96EF0	704 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	WRNIP1	Q96S55	665 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	GORASP1	Q9BQQ3	440 aa		5.21	□□□□□ -1.58
PTCD3-209	ENST00000472044	C11orf84	Q9BUA3	381 aa	Predicted RBP	5.21	□□□□□ -1.58

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