RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 PDILTQ8N807 584 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 SYT2Q8N9I0 419 aaPredicted RBP11.09□□□□□ -0.63
SF3A1-207ENST00000471342 SLC43A3Q8NBI5 491 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 GIMAP8Q8ND71 665 aaPredicted RBP11.09□□□□□ -0.63
SF3A1-207ENST00000471342 OR6J1Q8NGC5 347 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 SNX29Q8TEQ0 813 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 STAMQ92783 540 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 ERCC4Q92889 916 aaPredicted RBP11.09□□□□□ -0.63
SF3A1-207ENST00000471342 TIGD1Q96MW7 591 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 MED15Q96RN5 788 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 SH2D3AQ9BRG2 576 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 SDF4Q9BRK5 362 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 LXNQ9BS40 222 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 BEGAINQ9BUH8 593 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.09□□□□□ -0.63
SF3A1-207ENST00000471342 DDX19AQ9NUU7 478 aaKnown RBP11.09□□□□□ -0.63
SF3A1-207ENST00000471342 OGDHLQ9ULD0 1010 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 KIAA1024Q9UPX6 916 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 PCDHA2Q9Y5H9 948 aa11.09□□□□□ -0.63
SF3A1-207ENST00000471342 FRMD3A2A2Y4 597 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 BACH1O14867 736 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 XRCC6P12956 609 aaKnown RBP eCLIP11.08□□□□□ -0.64
SF3A1-207ENST00000471342 CCT6AP40227 531 aaKnown RBP11.08□□□□□ -0.64
SF3A1-207ENST00000471342 SYKP43405 635 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 STAT5BP51692 787 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 PSMC5P62195 406 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 SP4Q02446 784 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 DPYDQ12882 1025 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 NT5DC1Q5TFE4 455 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 NEK9Q8TD19 979 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 DHX58Q96C10 678 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 RUSC1Q9BVN2 902 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 FGFBP2Q9BYJ0 223 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 CLSTN2Q9H4D0 955 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 MLXIPQ9HAP2 919 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 TUBE1Q9UJT0 475 aa11.08□□□□□ -0.64
SF3A1-207ENST00000471342 DBR1Q9UK59 544 aaKnown RBP11.08□□□□□ -0.64
SF3A1-207ENST00000471342 NPHP3-ACAD11A0A0J9YXS1 232 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 TRAK2O60296 914 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 EYA4O95677 639 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 PSAPP07602 524 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 ZNF286BP0CG31 522 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 COL6A1P12109 1028 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 CCL5P13501 91 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 UBA7P41226 1012 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 PRKCEQ02156 737 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 DRP2Q13474 957 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 CUL4BQ13620 913 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 FSCN1Q16658 493 aaKnown RBP11.07□□□□□ -0.64
SF3A1-207ENST00000471342 COL13A1Q5TAT6 717 aaPredicted RBP11.07□□□□□ -0.64
SF3A1-207ENST00000471342 KRT79Q5XKE5 535 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 PLA2G4FQ68DD2 849 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 RINT1Q6NUQ1 792 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 MIS18BP1Q6P0N0 1132 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 TPH2Q8IWU9 490 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 KCTD17Q8N5Z5 321 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 WNT8BQ93098 351 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 MPHOSPH6Q99547 160 aaKnown RBP11.07□□□□□ -0.64
SF3A1-207ENST00000471342 C7orf25Q9BPX7 421 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 STRA6Q9BX79 667 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 DHX33Q9H6R0 707 aaKnown RBP11.07□□□□□ -0.64
SF3A1-207ENST00000471342 ZSWIM4Q9H7M6 989 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 POLD4Q9HCU8 107 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 ZNF302Q9NR11 478 aa11.07□□□□□ -0.64
SF3A1-207ENST00000471342 DNAH12Q6ZR08 3092 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 MBLAC1A4D2B0 266 aaPredicted RBP11.06□□□□□ -0.64
SF3A1-207ENST00000471342 RSPH10B2B2RC85 870 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 PLA2G4BP0C869 781 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 RSPH10BP0C881 870 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 YWHABP31946 246 aaKnown RBP11.06□□□□□ -0.64
SF3A1-207ENST00000471342 CDK7P50613 346 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 SOX10P56693 466 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 GIT2Q14161 759 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 ARHGEF6Q15052 776 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 KCNA10Q16322 511 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 PKN2Q16513 984 aaKnown RBP11.06□□□□□ -0.64
SF3A1-207ENST00000471342 TMEM266Q2M3C6 531 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 UTP14CQ5TAP6 766 aaKnown RBP11.06□□□□□ -0.64
SF3A1-207ENST00000471342 GLIS3Q8NEA6 775 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 ATP8B4Q8TF62 1192 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 TRAPPC12Q8WVT3 735 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 BSNDQ8WZ55 320 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 OSBPL7Q9BZF2 842 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 TRIM9Q9C026 710 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 MCOLN1Q9GZU1 580 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 HMX1Q9NP08 348 aaPredicted RBP11.06□□□□□ -0.64
SF3A1-207ENST00000471342 ANKEF1Q9NU02 776 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 STK17AQ9UEE5 414 aa11.06□□□□□ -0.64
SF3A1-207ENST00000471342 SCN10AQ9Y5Y9 1956 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 DDX11L8A8MPP1 907 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 H3BRB1 525 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 C22orf31O95567 290 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 OATP04181 439 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 INSRRP14616 1297 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 HOXD13P35453 343 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 ZNF131P52739 623 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 ZNF200P98182 395 aaPredicted RBP11.05□□□□□ -0.64
SF3A1-207ENST00000471342 PNOCQ13519 176 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 CSPP1Q1MSJ5 1256 aa11.05□□□□□ -0.64
SF3A1-207ENST00000471342 TRIM71Q2Q1W2 868 aaKnown RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms