RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PLS1Q14651 629 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 BTNL9Q6UXG8 535 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 EPM2AIP1Q7L775 607 aaPredicted RBP20.99■□□□□ 0.95
VIM-203ENST00000469543 FLAD1Q8NFF5 587 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 RBM46Q8TBY0 533 aaKnown RBP20.99■□□□□ 0.95
VIM-203ENST00000469543 CNKSR1Q969H4 720 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 GANQ9H2C0 597 aa20.99■□□□□ 0.95
VIM-203ENST00000469543 ATRNL1Q5VV63 1379 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 CIITAP33076 1130 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 MARSP56192 900 aaKnown RBP20.98■□□□□ 0.95
VIM-203ENST00000469543 FKBP1AP62942 108 aaKnown RBP20.98■□□□□ 0.95
VIM-203ENST00000469543 MAPK8IP2Q13387 824 aaPredicted RBP20.98■□□□□ 0.95
VIM-203ENST00000469543 LRCH2Q5VUJ6 765 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 ZNF70Q9UC06 446 aaPredicted RBP20.98■□□□□ 0.95
VIM-203ENST00000469543 TBX3O15119 743 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 PON1P27169 355 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 LMAN1P49257 510 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 FAM193AP78312 1265 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 EN1Q05925 392 aaPredicted RBP20.98■□□□□ 0.95
VIM-203ENST00000469543 MYCT1Q8N699 235 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 TRAF3IP3Q9Y228 551 aa20.98■□□□□ 0.95
VIM-203ENST00000469543 SSU72P8A0A1W2PR75 194 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 TULP1O00294 542 aaPredicted RBP20.97■□□□□ 0.95
VIM-203ENST00000469543 TGFB1I1O43294 461 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 NR3C1P04150 777 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 UCHL3P15374 230 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 ZNF571Q7Z3V5 609 aaPredicted RBP20.97■□□□□ 0.95
VIM-203ENST00000469543 IQCDQ96DY2 449 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 RBM12Q9NTZ6 932 aaKnown RBP20.97■□□□□ 0.95
VIM-203ENST00000469543 GNA14O95837 355 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 TUBB4BP68371 445 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 CKAP4Q07065 602 aaKnown RBP20.97■□□□□ 0.95
VIM-203ENST00000469543 EDRF1Q3B7T1 1238 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 CCNI2Q6ZMN8 369 aaPredicted RBP20.97■□□□□ 0.95
VIM-203ENST00000469543 IRF2BP2Q7Z5L9 587 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 NOX5Q96PH1 765 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 ZBTB21Q9ULJ3 1066 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 TMX2Q9Y320 296 aa20.97■□□□□ 0.95
VIM-203ENST00000469543 ZSCAN5CA6NGD5 496 aaPredicted RBP20.96■□□□□ 0.95
VIM-203ENST00000469543 PJA2O43164 708 aa20.96■□□□□ 0.95
VIM-203ENST00000469543 NPM3O75607 178 aaKnown RBP20.96■□□□□ 0.95
VIM-203ENST00000469543 XRCC5P13010 732 aaKnown RBP20.96■□□□□ 0.95
VIM-203ENST00000469543 SLC18A3Q16572 532 aa20.96■□□□□ 0.95
VIM-203ENST00000469543 RDH13Q8NBN7 331 aa20.96■□□□□ 0.95
VIM-203ENST00000469543 AGBL1Q96MI9 1066 aa20.96■□□□□ 0.95
VIM-203ENST00000469543 ALS2CR12Q96Q35 445 aa20.96■□□□□ 0.95
VIM-203ENST00000469543 HNRNPH2P55795 449 aaKnown RBP20.96■□□□□ 0.95
VIM-203ENST00000469543 DLGAP5Q15398 846 aa20.96■□□□□ 0.95
VIM-203ENST00000469543 BANK1Q8NDB2 785 aa20.96■□□□□ 0.95
VIM-203ENST00000469543 TBCAO75347 108 aaKnown RBP20.95■□□□□ 0.94
VIM-203ENST00000469543 PSMD10O75832 226 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 EXOC3L4Q17RC7 722 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 FOXR2Q6PJQ5 311 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 ZC3H3Q8IXZ2 948 aaKnown RBP20.95■□□□□ 0.94
VIM-203ENST00000469543 PROCA1Q8NCQ7 364 aaPredicted RBP20.95■□□□□ 0.94
VIM-203ENST00000469543 SPAG5Q96R06 1193 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 CNTNAP1P78357 1384 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 RBAK-RBAKDNI3L0D1 243 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 SYF2O95926 243 aaKnown RBP20.95■□□□□ 0.94
VIM-203ENST00000469543 TBC1D10BQ4KMP7 808 aaPredicted RBP20.95■□□□□ 0.94
VIM-203ENST00000469543 CCDC181Q5TID7 509 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 LARGE2Q8N3Y3 721 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 SLC35C1Q96A29 364 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 SELENOOQ9BVL4 669 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 ARHGEF10LQ9HCE6 1279 aa20.95■□□□□ 0.94
VIM-203ENST00000469543 ESYT3A0FGR9 886 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 GCOM1H8Y6P7 765 aaPredicted RBP20.94■□□□□ 0.94
VIM-203ENST00000469543 PIK3CDO00329 1044 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 EYA4O95677 639 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 AFPP02771 609 aaKnown RBP20.94■□□□□ 0.94
VIM-203ENST00000469543 POLR2MP0CAP2 368 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 NBPF9Q3BBW0 867 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 RSBN1LQ6PCB5 846 aaPredicted RBP20.94■□□□□ 0.94
VIM-203ENST00000469543 EDEM3Q9BZQ6 932 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 AIPL1Q9NZN9 384 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 FAM184BQ9ULE4 1060 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 PDXKO00764 312 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 GAS7O60861 476 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 CYP3A4P08684 503 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 TRADDQ15628 312 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 ASIC2Q16515 512 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 C1orf186Q6ZWK4 172 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 TRERF1Q96PN7 1200 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 GBP3Q9H0R5 595 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 TMOD2Q9NZR1 351 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 HPCAL4Q9UM19 191 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 HYOU1Q9Y4L1 999 aa20.94■□□□□ 0.94
VIM-203ENST00000469543 TISP43B9A030 160 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 LRRN2O75325 713 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 NAB2Q15742 525 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 OGFOD1Q8N543 542 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 UNC45AQ9H3U1 944 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 HERC5Q9UII4 1024 aaKnown RBP20.93■□□□□ 0.94
VIM-203ENST00000469543 ZNF646O15015 1829 aaPredicted RBP20.93■□□□□ 0.94
VIM-203ENST00000469543 INPP5BP32019 993 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 GGCXP38435 758 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 SLC15A2Q16348 729 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 FRMD5Q7Z6J6 570 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 CPXCR1Q8N123 301 aa20.93■□□□□ 0.94
VIM-203ENST00000469543 ZNF577Q9BSK1 485 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms