RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 MSL3Q8N5Y2 521 aaKnown RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 SPATA4Q8NEY3 305 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 CCDC102AQ96A19 550 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 HSD17B14Q9BPX1 270 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 PACSIN1Q9BY11 444 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 AIPL1Q9NZN9 384 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 TMOD2Q9NZR1 351 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 ZNF70Q9UC06 446 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 ZBTB12Q9Y330 459 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 HYOU1Q9Y4L1 999 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 CALUO43852 315 aaPredicted RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 PHACTR2O75167 634 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 TBCAO75347 108 aaKnown RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 AFPP02771 609 aaKnown RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 NR3C1P04150 777 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 TCP1P17987 556 aaKnown RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 KLRC1P26715 233 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 ASIC2Q16515 512 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 SLC18A3Q16572 532 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 LRCH2Q5VUJ6 765 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 MIGA2Q7L4E1 593 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 RNF10Q8N5U6 811 aaKnown RBP9.83□□□□□ -0.84
SYNE1-217ENST00000466159 DYDC2Q96IM9 177 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 LRRC1Q9BTT6 524 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 ZBTB21Q9ULJ3 1066 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 FAN1Q9Y2M0 1017 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 STK24Q9Y6E0 443 aa9.83□□□□□ -0.84
SYNE1-217ENST00000466159 GCOM1H8Y6P7 765 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 PSMD10O75832 226 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 POLR2MP0CAP2 368 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 XRCC5P13010 732 aaKnown RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 UCHL3P15374 230 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 MCM3P25205 808 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 PON1P27169 355 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 NMT1P30419 496 aaKnown RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 DLGAP5Q15398 846 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 TCERG1LQ5VWI1 586 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 IQCEQ6IPM2 695 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 RSBN1LQ6PCB5 846 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 CCNI2Q6ZMN8 369 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 MMGT1Q8N4V1 131 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 SUPT20HQ8NEM7 779 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 MS4A14Q96JA4 679 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 GLIS2Q9BZE0 524 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 GOPCQ9HD26 462 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 TYW1Q9NV66 732 aaKnown RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 FBXO28Q9NVF7 368 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 DMGDHQ9UI17 866 aaKnown RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 PCDHB13Q9Y5F0 798 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 COL2A1P02458 1487 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 CNTNAP1P78357 1384 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 TGFB1I1O43294 461 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 PALMO75781 387 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 FTCDO95954 541 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 DNA2P51530 1060 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 SLC7A5Q01650 507 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 PTK2Q05397 1052 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 NAB2Q15742 525 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 EXOC3L4Q17RC7 722 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 BMT2Q1RMZ1 405 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 KIAA0753Q2KHM9 967 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 MAP9Q49MG5 647 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 ZC2HC1CQ53FD0 456 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 CCDC181Q5TID7 509 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 ZNF572Q7Z3I7 529 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 IRF2BP2Q7Z5L9 587 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 DNAAF5Q86Y56 855 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 KSR1Q8IVT5 923 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 MYCT1Q8N699 235 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 FAM151AQ8WW52 585 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 TMEM39BQ9GZU3 492 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 VEZTQ9HBM0 779 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 WRAP73Q9P2S5 460 aaPredicted RBP9.82□□□□□ -0.84
SYNE1-217ENST00000466159 SYNPO2Q9UMS6 1093 aa9.82□□□□□ -0.84
SYNE1-217ENST00000466159 ARP10275 920 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 C1orf186Q6ZWK4 172 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 ZNF571Q7Z3V5 609 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 TXLNBQ8N3L3 684 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 RBM46Q8TBY0 533 aaKnown RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 SLC5A5Q92911 643 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 SPAG5Q96R06 1193 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 RANBP17Q9H2T7 1088 aaKnown RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 TUFT1Q9NNX1 390 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 AJAP1Q9UKB5 411 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 A0A0U1RQG5 324 aaPredicted RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 GAS7O60861 476 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 FAM13AO94988 1023 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 EPB41P11171 864 aaKnown RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 RPL13P26373 211 aaKnown RBP9.81□□□□□ -0.84
SYNE1-217ENST00000466159 ITIH3Q06033 890 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 PPP2R5CQ13362 524 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 EPHA7Q15375 998 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 SLC15A2Q16348 729 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 HSP90B2PQ58FF3 399 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 GJB7Q6PEY0 223 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 CHURC1Q8WUH1 139 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 SLC35C1Q96A29 364 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 EXOC4Q96A65 974 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 GMLQ99445 158 aa9.81□□□□□ -0.84
SYNE1-217ENST00000466159 SELENOOQ9BVL4 669 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms