RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 SMAD3P84022 425 aaKnown RBP14.74□□□□□ -0.05
COL28A1-206ENST00000465339 PPFIA1Q13136 1202 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 SAFBQ15424 915 aaKnown RBP eCLIP14.74□□□□□ -0.05
COL28A1-206ENST00000465339 LETM2Q2VYF4 491 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 LRCH2Q5VUJ6 765 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 SWSAP1Q6NVH7 229 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 DEFB128Q7Z7B8 93 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 LRCH3Q96II8 777 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 UIMC1Q96RL1 719 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 TEKT3Q9BXF9 490 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 ZNF302Q9NR11 478 aa14.74□□□□□ -0.05
COL28A1-206ENST00000465339 DDX25Q9UHL0 483 aaKnown RBP14.74□□□□□ -0.05
COL28A1-206ENST00000465339 POTEB3A0JP26 581 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 WDR64B1ANS9 1081 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 BTBD18B2RXH4 712 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 RPLP2P05387 115 aaKnown RBP14.73□□□□□ -0.05
COL28A1-206ENST00000465339 INSRRP14616 1297 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 THPOP40225 353 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 NR5A1Q13285 461 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 PLCB4Q15147 1175 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 GRIK4Q16099 956 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 ZNF618Q5T7W0 954 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 TAF2Q6P1X5 1199 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 PDXDC2PQ6P474 469 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 POTEBQ6S5H4 581 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 DIS3L2Q8IYB7 885 aaKnown RBP14.73□□□□□ -0.05
COL28A1-206ENST00000465339 EFCAB3Q8N7B9 438 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 FAM184AQ8NB25 1140 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 RDM1Q8NG50 284 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 TNFRSF25Q93038 417 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 VWCEQ96DN2 955 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 C8orf76Q96K31 380 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 FAM20AQ96MK3 541 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 FTOQ9C0B1 505 aaKnown RBP eCLIP14.73□□□□□ -0.05
COL28A1-206ENST00000465339 SAMM50Q9Y512 469 aa14.73□□□□□ -0.05
COL28A1-206ENST00000465339 MAFBQ9Y5Q3 323 aaPredicted RBP14.73□□□□□ -0.05
COL28A1-206ENST00000465339 TET1Q8NFU7 2136 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 MBLAC1A4D2B0 266 aaPredicted RBP14.72□□□□□ -0.05
COL28A1-206ENST00000465339 RSPH10B2B2RC85 870 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 TBX3O15119 743 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 HBP1O60381 514 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 CCNT1O60563 726 aaKnown RBP14.72□□□□□ -0.05
COL28A1-206ENST00000465339 PSMD10O75832 226 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 RSPH10BP0C881 870 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 JAK3P52333 1124 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 OTOP2Q7RTS6 562 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 RPAINQ86UA6 219 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 RSPH3Q86UC2 560 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 CCDC60Q8IWA6 550 aaPredicted RBP14.72□□□□□ -0.05
COL28A1-206ENST00000465339 ETNPPLQ8TBG4 499 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 ATP8B4Q8TF62 1192 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 WNT8BQ93098 351 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 TMX3Q96JJ7 454 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 DISC1Q9NRI5 854 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 TUBE1Q9UJT0 475 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 KIF3AQ9Y496 699 aa14.72□□□□□ -0.05
COL28A1-206ENST00000465339 CXCL10P02778 98 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 FOSBP53539 338 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 GPNMBQ14956 572 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 EARS2Q5JPH6 523 aaKnown RBP14.71□□□□□ -0.05
COL28A1-206ENST00000465339 ZNF484Q5JVG2 852 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 MARCH8Q5T0T0 291 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 FAM109BQ6ICB4 259 aaPredicted RBP14.71□□□□□ -0.05
COL28A1-206ENST00000465339 TRAF7Q6Q0C0 670 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 FBXO18Q8NFZ0 1043 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 UNC45AQ9H3U1 944 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 KCNMB3Q9NPA1 279 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 SLC4A7Q9Y6M7 1214 aa14.71□□□□□ -0.05
COL28A1-206ENST00000465339 COL1A2P08123 1366 aa14.71□□□□□ -0.06
COL28A1-206ENST00000465339 GTPBP6O43824 516 aaPredicted RBP14.7□□□□□ -0.06
COL28A1-206ENST00000465339 SLC37A4O43826 429 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 MARCH6O60337 910 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 NBNO60934 754 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 BAIAP3O94812 1187 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 BAG4O95429 457 aaKnown RBP14.7□□□□□ -0.06
COL28A1-206ENST00000465339 SLC34A2O95436 690 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 IGBP1P78318 339 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 GUCY1B3Q02153 619 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 FAM26DQ5JW98 314 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 CNKSR3Q6P9H4 555 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 B3GNT9Q6UX72 402 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 MIER3Q7Z3K6 550 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 CKAP2LQ8IYA6 745 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 SLFN12Q8IYM2 578 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 FAM167AQ96KS9 214 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 FOXP1Q9H334 677 aaPredicted RBP14.7□□□□□ -0.06
COL28A1-206ENST00000465339 NRBP2Q9NSY0 501 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 CXXC1Q9P0U4 656 aaPredicted RBP14.7□□□□□ -0.06
COL28A1-206ENST00000465339 GABBR1Q9UBS5 961 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 PCDHA2Q9Y5H9 948 aa14.7□□□□□ -0.06
COL28A1-206ENST00000465339 FAM205CA6NFA0 338 aa14.69□□□□□ -0.06
COL28A1-206ENST00000465339 ZBBXA8MT70 800 aa14.69□□□□□ -0.06
COL28A1-206ENST00000465339 TULP1O00294 542 aaPredicted RBP14.69□□□□□ -0.06
COL28A1-206ENST00000465339 CHMP2AO43633 222 aa14.69□□□□□ -0.06
COL28A1-206ENST00000465339 EFCAB14O75071 495 aa14.69□□□□□ -0.06
COL28A1-206ENST00000465339 CD2BP2O95400 341 aaKnown RBP14.69□□□□□ -0.06
COL28A1-206ENST00000465339 ATP4AP20648 1035 aa14.69□□□□□ -0.06
COL28A1-206ENST00000465339 MBTPS1Q14703 1052 aa14.69□□□□□ -0.06
COL28A1-206ENST00000465339 RUFY4Q6ZNE9 571 aa14.69□□□□□ -0.06
COL28A1-206ENST00000465339 NME8Q8N427 588 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms