RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 GUF1Q8N442 669 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 RAD54LQ92698 747 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 CENPKQ9BS16 269 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 SEC31BQ9NQW1 1179 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 NRBP2Q9NSY0 501 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 IQSEC2Q5JU85 1478 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 CPP00450 1065 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 ATP1A1P05023 1023 aaKnown RBP20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 AP3B2Q13367 1082 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 MUM1L1Q5H9M0 696 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 PPP1R18Q6NYC8 613 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 SCINQ9Y6U3 715 aa20.46■□□□□ 0.87
CCDC88B-204ENST00000463837 ABCA6Q8N139 1617 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 A6NJR5 290 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 ZSCAN20P17040 1043 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 POLGP54098 1239 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 TTC25Q96NG3 672 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 DRC3Q9H069 523 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 FBXO2Q9UK22 296 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 SAT1P21673 171 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 CHRNA3P32297 505 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 KIAA0825Q8IV33 1275 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 CHMP6Q96FZ7 201 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 RIOK1Q9BRS2 568 aaKnown RBP20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 EFHD1Q9BUP0 239 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 CDHR2Q9BYE9 1310 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 GFPT1Q06210 699 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 BEND6Q5SZJ8 279 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 FAM83BQ5T0W9 1011 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 SPATA4Q8NEY3 305 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 DPF2Q92785 391 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 COA7Q96BR5 231 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 TSPYL2Q9H2G4 693 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 MMEL1Q495T6 779 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 DNAJC24Q6P3W2 148 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 ST13P4Q8IZP2 240 aaPredicted RBP20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 OXER1Q8TDS5 423 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 TSC22D3Q99576 134 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 PAGR1Q9BTK6 254 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 MID2Q9UJV3 735 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 ASAP1Q9ULH1 1129 aa20.45■□□□□ 0.86
CCDC88B-204ENST00000463837 TTC4O95801 387 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 ARHGEF6Q15052 776 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 HNRNPLLQ8WVV9 542 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 SNX12Q9UMY4 172 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 WDR17Q8IZU2 1322 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 LRIG3Q6UXM1 1119 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 SAAL1Q96ER3 474 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 STOML1Q9UBI4 398 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 HDAC6Q9UBN7 1215 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 SNX24Q9Y343 169 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 CPDO75976 1380 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 MEFVO15553 781 aaPredicted RBP20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 GGPS1O95749 300 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 TMOD1P28289 359 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 ESRRGP62508 458 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 MKRN3Q13064 507 aaKnown RBP20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 KMT5AQ9NQR1 393 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 SERPINB13Q9UIV8 391 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 PLS3P13797 630 aa20.44■□□□□ 0.86
CCDC88B-204ENST00000463837 MED7O43513 233 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 GPC4O75487 556 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 MECOMQ03112 1051 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 USP17L2Q6R6M4 530 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 GRAMD1AQ96CP6 724 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 SERPINI1Q99574 410 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 TRIM55Q9BYV6 548 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 SEPT10Q9P0V9 454 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 CCPG1Q9ULG6 757 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 NR1I3Q14994 352 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 RNF207Q6ZRF8 634 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 PDIK1LQ8N165 341 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 LRRC43Q8N309 656 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 SDCCAG3Q96C92 435 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 DNAJC17Q9NVM6 304 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 DNAJC12Q9UKB3 198 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 WDR91A4D1P6 747 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 SPECC1L-ADORA2AF8WAN1 911 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 PPFIA2O75334 1257 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 ACSL3O95573 720 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 DEUP1Q05D60 604 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 KRT39Q6A163 491 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 SYT2Q8N9I0 419 aaPredicted RBP20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 EPN3Q9H201 632 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 KLC4Q9NSK0 619 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 RFX1P22670 979 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 ANXA13P27216 316 aa20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.43■□□□□ 0.86
CCDC88B-204ENST00000463837 USP17L8P0C7I0 530 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 ACTN1P12814 892 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 GPC5P78333 572 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 GABPAQ06546 454 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 BSDC1Q9NW68 430 aaPredicted RBP20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 INTUQ9ULD6 942 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 ARHGEF40Q8TER5 1519 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 LRRIQ4A6NIV6 560 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 TTI1O43156 1089 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 PPP1R37O75864 691 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 FAM160B1Q5W0V3 765 aa20.42■□□□□ 0.86
CCDC88B-204ENST00000463837 PDXDC1Q6P996 788 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms