RNA–Protein interactions for RNA: ENST00000462030.5

HPS3-204, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 2

Gene HPS3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-204ENST00000462030 SLC40A1Q9NP59 571 aa20.15■□□□□ 0.82
HPS3-204ENST00000462030 MTMR4Q9NYA4 1195 aa20.15■□□□□ 0.82
HPS3-204ENST00000462030 PON1P27169 355 aa20.14■□□□□ 0.82
HPS3-204ENST00000462030 MAP2K2P36507 400 aa20.14■□□□□ 0.82
HPS3-204ENST00000462030 RHBDL3P58872 404 aa20.14■□□□□ 0.82
HPS3-204ENST00000462030 PLCB4Q15147 1175 aa20.14■□□□□ 0.82
HPS3-204ENST00000462030 IFI16Q16666 785 aaKnown RBP20.14■□□□□ 0.82
HPS3-204ENST00000462030 EDRF1Q3B7T1 1238 aa20.14■□□□□ 0.82
HPS3-204ENST00000462030 ARSHQ5FYA8 562 aa20.14■□□□□ 0.82
HPS3-204ENST00000462030 KRT18P05783 430 aaKnown RBP20.14■□□□□ 0.81
HPS3-204ENST00000462030 STAT3P40763 770 aa20.14■□□□□ 0.81
HPS3-204ENST00000462030 TTBK2Q6IQ55 1244 aa20.14■□□□□ 0.81
HPS3-204ENST00000462030 ZNF804AQ7Z570 1209 aa20.14■□□□□ 0.81
HPS3-204ENST00000462030 TMC3Q7Z5M5 1100 aa20.14■□□□□ 0.81
HPS3-204ENST00000462030 ADGRF4Q8IZF3 695 aa20.14■□□□□ 0.81
HPS3-204ENST00000462030 RAPGEF5Q92565 580 aa20.14■□□□□ 0.81
HPS3-204ENST00000462030 DPH5Q9H2P9 285 aa20.14■□□□□ 0.81
HPS3-204ENST00000462030 BYSLQ13895 437 aaKnown RBP20.13■□□□□ 0.81
HPS3-204ENST00000462030 EXOC3L4Q17RC7 722 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 TPTE2Q6XPS3 522 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 ZKSCAN4Q969J2 545 aaPredicted RBP20.13■□□□□ 0.81
HPS3-204ENST00000462030 ARMCX3Q9UH62 379 aaPredicted RBP20.13■□□□□ 0.81
HPS3-204ENST00000462030 NARFQ9UHQ1 456 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 NENFQ9UMX5 172 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 STXBP5LQ9Y2K9 1186 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 LEMD3Q9Y2U8 911 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 PNMA6FA0A0J9YX94 578 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 CCDC188H7C350 402 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 DNM1LO00429 736 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 MED24O75448 989 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 AFPP02771 609 aaKnown RBP20.13■□□□□ 0.81
HPS3-204ENST00000462030 SNHG28P0DPA3 235 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 MAGOHP61326 146 aaKnown RBP20.13■□□□□ 0.81
HPS3-204ENST00000462030 DCAF17Q5H9S7 520 aaPredicted RBP20.13■□□□□ 0.81
HPS3-204ENST00000462030 AGBL2Q5U5Z8 902 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 RASGEF1CQ8N431 466 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 CUL5Q93034 780 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 MAGOHBQ96A72 148 aaKnown RBP20.13■□□□□ 0.81
HPS3-204ENST00000462030 SEC16BQ96JE7 1060 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 CCDC114Q96M63 670 aa20.13■□□□□ 0.81
HPS3-204ENST00000462030 BZW2Q9Y6E2 419 aaKnown RBP20.13■□□□□ 0.81
HPS3-204ENST00000462030 FRMD3A2A2Y4 597 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 POTEFA5A3E0 1075 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 POTEIP0CG38 1075 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 AKR1B1P15121 316 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 SLC16A2P36021 539 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 DRP2Q13474 957 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 MTMR3Q13615 1198 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 GJB7Q6PEY0 223 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 POTEGQ6S5H5 508 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 POTEEQ6S8J3 1075 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 PPP4R3CPQ6ZMV5 832 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 SLFN11Q7Z7L1 901 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 A1CFQ9NQ94 594 aaKnown RBP20.12■□□□□ 0.81
HPS3-204ENST00000462030 FLOT1O75955 427 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 HOXD13P35453 343 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 PRKCIP41743 596 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 SLC12A3P55017 1021 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 DHX9Q08211 1270 aaKnown RBP20.12■□□□□ 0.81
HPS3-204ENST00000462030 KRT71Q3SY84 523 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 DAAM2Q86T65 1068 aa20.12■□□□□ 0.81
HPS3-204ENST00000462030 GOLGA6L7A0A1B0GV03 622 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 F8VZ95 297 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 CHUKO15111 745 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 RFC4P35249 363 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 PPP1R18Q6NYC8 613 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 FRMD5Q7Z6J6 570 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 NT5DC3Q86UY8 548 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 TRIM51Q9BSJ1 452 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 TRIM31Q9BZY9 425 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 CXorf56Q9H5V9 222 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 SIX2Q9NPC8 291 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 DDX3XO00571 662 aaKnown RBP eCLIP20.11■□□□□ 0.815e-8■■■■□ 22.3
HPS3-204ENST00000462030 H2AFZP0C0S5 128 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 EPHA7Q15375 998 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 ANKRD20A8PQ5CZ79 823 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 DPP8Q6V1X1 898 aaPredicted RBP20.11■□□□□ 0.81
HPS3-204ENST00000462030 H2AFVQ71UI9 128 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 C3orf20Q8ND61 904 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 DHX36Q9H2U1 1008 aaKnown RBP20.11■□□□□ 0.81
HPS3-204ENST00000462030 SLITRK6Q9H5Y7 841 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 ACTR5Q9H9F9 607 aaPredicted RBP20.11■□□□□ 0.81
HPS3-204ENST00000462030 SUCLA2Q9P2R7 463 aaPredicted RBP20.11■□□□□ 0.81
HPS3-204ENST00000462030 NR2E1Q9Y466 385 aa20.11■□□□□ 0.81
HPS3-204ENST00000462030 C5orf60A6NFR6 353 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 AKAP3O75969 853 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 PAEPP09466 180 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 GCFC2P16383 781 aaKnown RBP20.1■□□□□ 0.81
HPS3-204ENST00000462030 ZNF543Q08ER8 600 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 TCERG1LQ5VWI1 586 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 SFR1Q86XK3 245 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 U2AF1L4Q8WU68 220 aaKnown RBP20.1■□□□□ 0.81
HPS3-204ENST00000462030 CNTNAP4Q9C0A0 1308 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 PLIN4Q96Q06 1357 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 FAM170AA1A519 330 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 PHF20L1A8MW92 1017 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 USP17L15C9J2P7 530 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 USP17L13C9JLJ4 530 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 USP17L11C9JVI0 530 aa20.1■□□□□ 0.81
HPS3-204ENST00000462030 USP17L18D6R9N7 530 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms