RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 HIC1Q14526 733 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 LRIT3Q3SXY7 679 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 ZNF484Q5JVG2 852 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 SWSAP1Q6NVH7 229 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 RSPH3Q86UC2 560 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 NEK9Q8TD19 979 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 PPP1R13LQ8WUF5 828 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 GABBR1Q9UBS5 961 aa13.35□□□□□ -0.27
VPS52-213ENST00000461743 KIF28PB7ZC32 967 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 LAD1O00515 517 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 CXCL10P02778 98 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 OATP04181 439 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 ACTN1P12814 892 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 CCL23P55773 120 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 ZNF200P98182 395 aaPredicted RBP13.34□□□□□ -0.27
VPS52-213ENST00000461743 PRKCEQ02156 737 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 SPIRE1Q08AE8 756 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 RILPL1Q5EBL4 403 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 TTC38Q5R3I4 469 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 LARP1BQ659C4 914 aaKnown RBP13.34□□□□□ -0.27
VPS52-213ENST00000461743 CKAP2LQ8IYA6 745 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 MTMR9Q96QG7 549 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 PPME1Q9Y570 386 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 MYH11P35749 1972 aa13.34□□□□□ -0.27
VPS52-213ENST00000461743 SMIM35A0A1B0GVV1 85 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 BAIAP3O94812 1187 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 OR52Z1P0C646 297 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 PDIA4P13667 645 aaKnown RBP13.33□□□□□ -0.28
VPS52-213ENST00000461743 ATP4AP20648 1035 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 THPOP40225 353 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 PSMC5P62195 406 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 EPHA7Q15375 998 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 FAM26DQ5JW98 314 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 TMEM240Q5SV17 173 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 MARCH8Q5T0T0 291 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 RASIP1Q5U651 963 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 MCTP1Q6DN14 999 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 TRAF7Q6Q0C0 670 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 FAM43BQ6ZT52 329 aaPredicted RBP13.33□□□□□ -0.28
VPS52-213ENST00000461743 BRAPQ7Z569 592 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 ZNF710Q8N1W2 664 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 HERVK_113Q902F9 699 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 WNT8BQ93098 351 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 GJA10Q969M2 543 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 SCLYQ96I15 445 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 RNPC3Q96LT9 517 aaKnown RBP13.33□□□□□ -0.28
VPS52-213ENST00000461743 UIMC1Q96RL1 719 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.33□□□□□ -0.283e-6■■■■□ 22
VPS52-213ENST00000461743 NRBP2Q9NSY0 501 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 PCDHA12Q9UN75 941 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 PCDHA2Q9Y5H9 948 aa13.33□□□□□ -0.28
VPS52-213ENST00000461743 RALGAPA2Q2PPJ7 1873 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 NLRC5Q86WI3 1866 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 RSPH10B2B2RC85 870 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 WNT7AO00755 349 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 MAGEB2O15479 319 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 ZNF862O60290 1169 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 EFCAB14O75071 495 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 P4HBP07237 508 aaKnown RBP13.32□□□□□ -0.28
VPS52-213ENST00000461743 RSPH10BP0C881 870 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 MCM7P33993 719 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 QARSP47897 775 aaKnown RBP13.32□□□□□ -0.28
VPS52-213ENST00000461743 EPHB4P54760 987 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 TMEM266Q2M3C6 531 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 XKR3Q5GH77 459 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 ZNF618Q5T7W0 954 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 GPR153Q6NV75 609 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 NME8Q8N427 588 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 TTC12Q9H892 705 aaPredicted RBP13.32□□□□□ -0.28
VPS52-213ENST00000461743 STK24Q9Y6E0 443 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 SZT2Q5T011 3432 aa13.32□□□□□ -0.28
VPS52-213ENST00000461743 COL4A6Q14031 1691 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 TTC3P53804 2025 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 ZBTB42B2RXF5 422 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 M0QZ92 97 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 EML1O00423 815 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 C22orf31O95567 290 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 FGBP02675 491 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 PRPHP41219 470 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 IGBP1P78318 339 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 SHHQ15465 462 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 UGCGQ16739 394 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 C9orf50Q5SZB4 431 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 NCAPH2Q6IBW4 605 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 CNKSR3Q6P9H4 555 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 MTHFD1LQ6UB35 978 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 RUFY4Q6ZNE9 571 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 C4orf19Q8IY42 314 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 ERMNQ8TAM6 284 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 JPH2Q9BR39 696 aaPredicted RBP13.31□□□□□ -0.28
VPS52-213ENST00000461743 LXNQ9BS40 222 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 NIFKQ9BYG3 293 aaKnown RBP13.31□□□□□ -0.28
VPS52-213ENST00000461743 RAB34Q9BZG1 259 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 SQORQ9Y6N5 450 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 KDM3AQ9Y4C1 1321 aa13.31□□□□□ -0.28
VPS52-213ENST00000461743 LYPLA2O95372 231 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 BMP15O95972 392 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 ATP2B1P20020 1258 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 MUTP22033 750 aa13.3□□□□□ -0.28
VPS52-213ENST00000461743 FXR2P51116 673 aaKnown RBP eCLIP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms