RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 BANK1Q8NDB2 785 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 EXOC4Q96A65 974 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 RASSF4Q9H2L5 321 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 SEMA6BQ9H3T3 888 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 TMOD4Q9NZQ9 345 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 ESYT2A0FGR8 921 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 CELF2O95319 508 aaKnown RBP12.68□□□□□ -0.38
NPHP4-204ENST00000460696 MESDQ14696 234 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 NAALADL2Q58DX5 795 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 PDXDC1Q6P996 788 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 FAM20AQ96MK3 541 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 PNKPQ96T60 521 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 HSD3B7Q9H2F3 369 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 SYNCQ9H7C4 482 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 PPANQ9NQ55 473 aaKnown RBP12.68□□□□□ -0.38
NPHP4-204ENST00000460696 USTQ9Y2C2 406 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 SUGT1Q9Y2Z0 365 aa12.68□□□□□ -0.38
NPHP4-204ENST00000460696 GOLGA8IPA6NC78 632 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 GOLGA8JA6NMD2 632 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 NMT1P30419 496 aaKnown RBP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 ACTN2P35609 894 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 PLA2G4AP47712 749 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 EPHB4P54760 987 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 PPP4R3CPQ6ZMV5 832 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 KIFAP3Q92845 792 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 HOOK2Q96ED9 719 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 PAIP2Q9BPZ3 127 aaKnown RBP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 ZNF341Q9BYN7 854 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 FHOD1Q9Y613 1164 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 ZNF142P52746 1687 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 FXR2P51116 673 aaKnown RBP eCLIP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 SEMA3FQ13275 785 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 SPATA4Q8NEY3 305 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 EIF2AK1Q9BQI3 630 aaKnown RBP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 CAPS2Q9BXY5 557 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 NMRK2Q9NPI5 230 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 DDX4Q9NQI0 724 aaKnown RBP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 STIM2Q9P246 746 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 ANKRD62A6NC57 917 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 TAL1P17542 331 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 GOLGA5Q8TBA6 731 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 RIN2Q8WYP3 895 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 OTUD5Q96G74 571 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 MS4A14Q96JA4 679 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 LRRC1Q9BTT6 524 aa12.67□□□□□ -0.38
NPHP4-204ENST00000460696 UBE2TQ9NPD8 197 aaPredicted RBP12.67□□□□□ -0.38
NPHP4-204ENST00000460696 TBC1D8O95759 1140 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 TRIM49P0CI25 452 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 TRIM49CP0CI26 452 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 VPS41P49754 854 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 WRNIP1Q96S55 665 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 ASIC3Q9UHC3 531 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 SNX12Q9UMY4 172 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 SMARCA1P28370 1054 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 SUPT20HL1Q3ZLR7 823 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 STYK1Q6J9G0 422 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 HHIPL2Q6UWX4 724 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 SLC30A10Q6XR72 485 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 KIAA0895Q8NCT3 520 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 MTRQ99707 1265 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 DUSP9Q99956 384 aaKnown RBP12.66□□□□□ -0.38
NPHP4-204ENST00000460696 REEP2Q9BRK0 252 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 RIOX1Q9H6W3 641 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 EHD2Q9NZN4 543 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 SCN11AQ9UI33 1791 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 SLC9A1P19634 815 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 GGCXP38435 758 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 CCT5P48643 541 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 STRN3Q13033 797 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 BBXQ8WY36 941 aaPredicted RBP12.66□□□□□ -0.38
NPHP4-204ENST00000460696 POMGNT1Q8WZA1 660 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 ERGIC2Q96RQ1 377 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 DNAJC12Q9UKB3 198 aa12.66□□□□□ -0.38
NPHP4-204ENST00000460696 ABCB11O95342 1321 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 ADAMTS3O15072 1205 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 CAPN15O75808 1086 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 MNAT1P51948 309 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 RUFY4Q6ZNE9 571 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 MCF2L2Q86YR7 1114 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 TNFRSF25Q93038 417 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 KCNK9Q9NPC2 374 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 PLAGL2Q9UPG8 496 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 DDTLA6NHG4 134 aaPredicted RBP12.65□□□□□ -0.38
NPHP4-204ENST00000460696 PGRMC1O00264 195 aaKnown RBP12.65□□□□□ -0.38
NPHP4-204ENST00000460696 ABL1P00519 1130 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 IL1R1P14778 569 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 GBP2P32456 591 aaPredicted RBP12.65□□□□□ -0.38
NPHP4-204ENST00000460696 RASA3Q14644 834 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 SPATA20Q8TB22 786 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 GLIS2Q9BZE0 524 aaPredicted RBP12.65□□□□□ -0.38
NPHP4-204ENST00000460696 IVNS1ABPQ9Y6Y0 642 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 E7EVH7 732 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 RNF225M0QZC1 329 aaPredicted RBP12.65□□□□□ -0.38
NPHP4-204ENST00000460696 HNRNPDLO14979 420 aaKnown RBP12.65□□□□□ -0.38
NPHP4-204ENST00000460696 N4BP1O75113 896 aaKnown RBP12.65□□□□□ -0.38
NPHP4-204ENST00000460696 MYBP10242 640 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 EPHX2P34913 555 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 PEX3P56589 373 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 STRIP1Q5VSL9 837 aa12.65□□□□□ -0.38
NPHP4-204ENST00000460696 CENPPQ6IPU0 288 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms