RNA–Protein interactions for RNA: ENST00000460158.1

VPS8-215, Transcript of VPS8, CORVET complex subunit, human

TSL 3

Gene VPS8, Length 366 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-215	ENST00000460158	FKBP9P1	Q75LS8	142 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	STK32C	Q86UX6	486 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	PROSER1	Q86XN7	944 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	DDX42	Q86XP3	938 aa	Known RBP eCLIP	4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	KIAA1958	Q8N8K9	716 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	SMARCC2	Q8TAQ2	1214 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	ZCRB1	Q8TBF4	217 aa	Known RBP	4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	DDX11	Q96FC9	970 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	ELF4	Q99607	663 aa	Predicted RBP	4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	TTC1	Q99614	292 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	XYLT2	Q9H1B5	865 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	FAN1	Q9Y2M0	1017 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	ATP8A1	Q9Y2Q0	1164 aa		4.66	□□□□□ -1.66
VPS8-215	ENST00000460158	TGM5	O43548	720 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	MME	P08473	750 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	CYP2C8	P10632	490 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	PI3	P19957	117 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	PTX3	P26022	381 aa	Predicted RBP	4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	THBS2	P35442	1172 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	LIMS1	P48059	325 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	LSS	P48449	732 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	FOXO4	P98177	505 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	DBP	Q10586	325 aa	Predicted RBP	4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	ZNF174	Q15697	407 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	CATSPERE	Q5SY80	951 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	CD276	Q5ZPR3	534 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	CC2D1A	Q6P1N0	951 aa	Predicted RBP	4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	TMC5	Q6UXY8	1006 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	LIPI	Q6XZB0	460 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	B3GNT8	Q7Z7M8	397 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	ZC3H18	Q86VM9	953 aa	Known RBP	4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	TMEFF1	Q8IYR6	380 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	EFHB	Q8N7U6	833 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	ATL2	Q8NHH9	583 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	DACT3	Q96B18	629 aa	Predicted RBP	4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	NOX5	Q96PH1	765 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	BRINP2	Q9C0B6	783 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	PCIF1	Q9H4Z3	704 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	IFT22	Q9H7X7	185 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	EMC7	Q9NPA0	242 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	HSPBP1	Q9NZL4	362 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	SPO11	Q9Y5K1	396 aa		4.65	□□□□□ -1.67
VPS8-215	ENST00000460158	FOXP2	O15409	715 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	ZEB2	O60315	1214 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	IBSP	P21815	317 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	SDHA	P31040	664 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	CDKN1C	P49918	316 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	AFF3	P51826	1226 aa	Known RBP	4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	EVA1C	P58658	441 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	HERVK_113	P62684	666 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	STAT4	Q14765	748 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	ATP13A4	Q4VNC1	1196 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	ERICH6B	Q5W0A0	696 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	ASB15	Q8WXK1	588 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	GORASP1	Q9BQQ3	440 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	SLC39A2	Q9NP94	309 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	NGRN	Q9NPE2	291 aa	Known RBP	4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	ACSS2	Q9NR19	701 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	TOMM22	Q9NS69	142 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	MCM8	Q9UJA3	840 aa		4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	NOP58	Q9Y2X3	529 aa	Known RBP	4.64	□□□□□ -1.67
VPS8-215	ENST00000460158	BRINP1	O60477	761 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	ENO2	P09104	434 aa	Predicted RBP	4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	CPE	P16870	476 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	AOAH	P28039	575 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	MC4R	P32245	332 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	ITGA1	P56199	1179 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	PFKP	Q01813	784 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	OCRL	Q01968	901 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	PHF19	Q5T6S3	580 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	VASN	Q6EMK4	673 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	ESRP1	Q6NXG1	681 aa	Known RBP	4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	C11orf74	Q86VG3	221 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	PRPF38A	Q8NAV1	312 aa	Known RBP	4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	WDR66	Q8TBY9	1149 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	ERCC4	Q92889	916 aa	Predicted RBP	4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	GBP4	Q96PP9	640 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	C11orf84	Q9BUA3	381 aa	Predicted RBP	4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	MS4A5	Q9H3V2	200 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	ZMAT4	Q9H898	229 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	BTBD7	Q9P203	1132 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	ARHGAP28	Q9P2N2	729 aa		4.63	□□□□□ -1.67
VPS8-215	ENST00000460158	hCG_2014768	A0A024R1R8	64 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	PRAMEF22	A3QJZ6	481 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	OTOL1	A6NHN0	477 aa	Predicted RBP	4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	ZNF839	A8K0R7	811 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	GOLGA6L22	H0YM25	854 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	GPR39	O43194	453 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	PLA2G1B	P04054	148 aa	Known RBP	4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	CYP17A1	P05093	508 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	SMAD3	P84022	425 aa	Known RBP	4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	TMPRSS15	P98073	1019 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	ADAM9	Q13443	819 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	SMAD4	Q13485	552 aa	Known RBP	4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	RTP5	Q14D33	572 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	SMAD2	Q15796	467 aa	Known RBP	4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	SKIDA1	Q1XH10	827 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	PRAMEF18	Q5VWM3	479 aa		4.62	□□□□□ -1.67
VPS8-215	ENST00000460158	FAM129C	Q86XR2	697 aa		4.62	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms