RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 COPEO14579 308 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 GSTA4O15217 222 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 KRT10P13645 584 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 SLC16A2P36021 539 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 IL6STP40189 918 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 FAM98CQ17RN3 349 aaKnown RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 DOK7Q18PE1 504 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 TBC1D10BQ4KMP7 808 aaPredicted RBP8.36□□□□□ -1.07
NEDD9-204ENST00000448183 USP17L2Q6R6M4 530 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 CLEC17AQ6ZS10 378 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 SPICE1Q8N0Z3 855 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 PROM2Q8N271 834 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 TTC17Q96AE7 1141 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 FIS1Q9Y3D6 152 aa8.36□□□□□ -1.07
NEDD9-204ENST00000448183 MAGI3Q5TCQ9 1506 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 ARL4CP56559 192 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 HDLBPQ00341 1268 aaKnown RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 CAV1Q03135 178 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 BEND6Q5SZJ8 279 aaPredicted RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 OR6B2Q6IFH4 312 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 DEPDC1BQ8WUY9 529 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 CFAP36Q96G28 342 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 FAM96AQ9H5X1 160 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 NXF1Q9UBU9 619 aaKnown RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 PREX2Q70Z35 1606 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 TJP3O95049 919 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 ZRANB2O95218 330 aaKnown RBP eCLIP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 BMP3P12645 472 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 USP14P54578 494 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 FAM47CQ5HY64 1035 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 DGKHQ86XP1 1220 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 SRRM1Q8IYB3 904 aaKnown RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 EXOC8Q8IYI6 725 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 HIPK4Q8NE63 616 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 CDHR1Q96JP9 859 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 SH3GLB2Q9NR46 395 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 WDR70Q9NW82 654 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 RPAP1Q9BWH6 1393 aaPredicted RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 PTCH1Q13635 1447 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 STK36Q9NRP7 1315 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 LRRC53A6NM62 1247 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 CHGBP05060 677 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 DDIT3P35638 169 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 IGBP1P78318 339 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 OCRLQ01968 901 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 TRMT10CQ7L0Y3 403 aaKnown RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 NLRP14Q86W24 1093 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 THOC1Q96FV9 657 aaKnown RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 OSBPL9Q96SU4 736 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 BHMT2Q9H2M3 363 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 DNAJC12Q9UKB3 198 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 KRT38O76015 456 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 HAUS5O94927 633 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 HSPA4LO95757 839 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 HSPA2P54652 639 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 COG1Q8WTW3 980 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 RBM41Q96IZ5 413 aaKnown RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 CALR3Q96L12 384 aaKnown RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 RPS6KC1Q96S38 1066 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 GOLPH3LQ9H4A5 285 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 ZFP69BQ9UJL9 534 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 APOBEC2Q9Y235 224 aaKnown RBP8.35□□□□□ -1.07
NEDD9-204ENST00000448183 CLASP1Q7Z460 1538 aa8.35□□□□□ -1.07
NEDD9-204ENST00000448183 GRID2IPA4D2P6 1211 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CFAP73A6NFT4 308 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ZNF233A6NK53 670 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 USP27XA6NNY8 438 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 SLC12A1Q13621 1099 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 SURF1Q15526 300 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 BZW1Q7L1Q6 419 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 EPM2AIP1Q7L775 607 aaPredicted RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 LCA5Q86VQ0 697 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 GSPT2Q8IYD1 628 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TTC25Q96NG3 672 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 LRRC37BQ96QE4 947 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 SNX25Q9H3E2 840 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 GJB4Q9NTQ9 266 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 MRFAP1Q9Y605 127 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ADCY10Q96PN6 1610 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 PVALEFA0A1B0GWK0 134 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 TRIM49BA6NDI0 452 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 NVLO15381 856 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CTIFO43310 598 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 PYGBP11216 843 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CD58P19256 250 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 PMS2P54278 862 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ACTN3Q08043 901 aaPredicted RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 FSCBQ5H9T9 825 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 NCAPG2Q86XI2 1143 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CEP70Q8NHQ1 597 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 VPS39Q96JC1 886 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ATP6V1G3Q96LB4 118 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 STRBPQ96SI9 672 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 YIPF3Q9GZM5 350 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 LRRC4Q9HBW1 653 aa8.34□□□□□ -1.07
NEDD9-204ENST00000448183 CNOT8Q9UFF9 292 aaKnown RBP8.34□□□□□ -1.07
NEDD9-204ENST00000448183 ANAPC7Q9UJX3 599 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms