RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CLDN3O15551 220 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 EYA4O95677 639 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 LDHAP00338 332 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 NR3C1P04150 777 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 VSTM4Q8IW00 320 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 LRFN2Q9ULH4 789 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 RIOK3O14730 519 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 PHKA2P46019 1235 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 GRIK5Q16478 980 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 PTPROQ16827 1216 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 KNOP1Q1ED39 458 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 ERO1BQ86YB8 467 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 RHPN2Q8IUC4 686 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 KLHL7Q8IXQ5 586 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 PROM2Q8N271 834 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 CHST13Q8NET6 341 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 GTF3C2Q8WUA4 911 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 FAM81BQ96LP2 452 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 MIS12Q9H081 205 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 PPP2R3BQ9Y5P8 575 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 SAR1BQ9Y6B6 198 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 LMO7Q8WWI1 1683 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 CAPN9O14815 690 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 GGPS1O95749 300 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 STAT5BP51692 787 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 INTS8Q75QN2 995 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 GPC2Q8N158 579 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 FAM133AQ8N9E0 248 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 XXYLT1Q8NBI6 393 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 GPRC5AQ8NFJ5 357 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 KIAA1524Q8TCG1 905 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 IDI2Q9BXS1 227 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 FAM204AQ9H8W3 233 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 PFASO15067 1338 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 THAP12O43422 761 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 OPA1O60313 960 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 STAM2O75886 525 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 GFPT2O94808 682 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 ICAM1P05362 532 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 YWHABP31946 246 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 RPS6P62753 249 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 RNASELQ05823 741 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 DPF2Q92785 391 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 TRIM31Q9BZY9 425 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 POLR3FQ9H1D9 316 aaPredicted RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 TMEM60Q9H2L4 133 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 ZFYVE28Q9HCC9 887 aa8.06□□□□□ -1.12
SYNE1-213ENST00000448038 UTP11Q9Y3A2 253 aaKnown RBP8.06□□□□□ -1.12
SYNE1-213ENST00000448038 E7EVH7 732 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ACTN4O43707 911 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ATP2A2P16615 1042 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ZBED6P86452 979 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 IFRD2Q12894 506 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 SCYL2Q6P3W7 929 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 C7orf31Q8N865 590 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 GMCL1Q96IK5 515 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ZNF668Q96K58 619 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 METTL16Q86W50 562 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 MXRA8Q9BRK3 442 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ABCC6O95255 1503 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 GOLGA6L7A0A1B0GV03 622 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ERICH4A6NGS2 130 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 KCNK3O14649 394 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 HIP1RO75146 1068 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 GUF1Q8N442 669 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 GMCL1P1Q8NEA9 526 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ZBTB9Q96C00 473 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 IQCGQ9H095 443 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 RRAGDQ9NQL2 400 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 IL17RBQ9NRM6 502 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 TYW1Q9NV66 732 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 TLDC2A0PJX2 215 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 SMIM23A6NLE4 172 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 RRP9O43818 475 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 VIL1P09327 827 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 VEGFAP15692 232 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ETF1P62495 437 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 MYO1EQ12965 1108 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 CLUL1Q15846 466 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 NAALADL2Q58DX5 795 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 CCDC105Q8IYK2 499 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 DAGLBQ8NCG7 672 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 CEP63Q96MT8 703 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 TAAR1Q96RJ0 339 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 TRIM9Q9C026 710 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 SNX25Q9H3E2 840 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 STIM2Q9P246 746 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ASIC3Q9UHC3 531 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 PYCARDQ9ULZ3 195 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ABL1P00519 1130 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 HADHQ16836 314 aaKnown RBP8.05□□□□□ -1.12
SYNE1-213ENST00000448038 LONRF2Q1L5Z9 754 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ZNF568Q3ZCX4 644 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 USP49Q70CQ1 688 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 ZFPM1Q8IX07 1006 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 CERS5Q8N5B7 392 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 OR6J1Q8NGC5 347 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 SH2D3AQ9BRG2 576 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 KIAA1586Q9HCI6 787 aa8.05□□□□□ -1.12
SYNE1-213ENST00000448038 STK10O94804 968 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms