RNA–Protein interactions for RNA: ENST00000447182.6

SDCBP-204, Transcript of syndecan binding protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SDCBP, Length 2,103 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-204ENST00000447182 RASGEF1CQ8N431 466 aa20.87■□□□□ 0.93
SDCBP-204ENST00000447182 ZNF473Q8WTR7 871 aaKnown RBP20.87■□□□□ 0.93
SDCBP-204ENST00000447182 SERPINB13Q9UIV8 391 aa20.87■□□□□ 0.93
SDCBP-204ENST00000447182 INTUQ9ULD6 942 aa20.87■□□□□ 0.93
SDCBP-204ENST00000447182 TAF1LQ8IZX4 1826 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 CEP104O60308 925 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 CASP5P51878 434 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 GIT2Q14161 759 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 HLTFQ14527 1009 aaKnown RBP eCLIP20.86■□□□□ 0.93
SDCBP-204ENST00000447182 RBM46Q8TBY0 533 aaKnown RBP20.86■□□□□ 0.93
SDCBP-204ENST00000447182 LMBR1Q8WVP7 490 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 GCOM1H8Y6P7 765 aaPredicted RBP20.86■□□□□ 0.93
SDCBP-204ENST00000447182 SART1O43290 800 aaKnown RBP20.86■□□□□ 0.93
SDCBP-204ENST00000447182 FAM107AO95990 144 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 MYZAPP0CAP1 466 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 XRCC5P13010 732 aaKnown RBP20.86■□□□□ 0.93
SDCBP-204ENST00000447182 SLC16A2P36021 539 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 JAM2P57087 298 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 SPIRE1Q08AE8 756 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 PICALMQ13492 652 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 EPHA7Q15375 998 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 NLRP14Q86W24 1093 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 OTUD6BQ8N6M0 293 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 METTL13Q8N6R0 699 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 PRPF38AQ8NAV1 312 aaKnown RBP20.86■□□□□ 0.93
SDCBP-204ENST00000447182 MYCBPAPQ8TBZ2 947 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 CCT8L2Q96SF2 557 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 SUCLA2Q9P2R7 463 aaPredicted RBP20.86■□□□□ 0.93
SDCBP-204ENST00000447182 STXBP5LQ9Y2K9 1186 aa20.86■□□□□ 0.93
SDCBP-204ENST00000447182 POTEFA5A3E0 1075 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 CALUO43852 315 aaPredicted RBP20.85■□□□□ 0.93
SDCBP-204ENST00000447182 POTEIP0CG38 1075 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 HOXD13P35453 343 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 FNTAP49354 379 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 NPEPPSP55786 919 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 BIRC3Q13489 604 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 UAP1Q16222 522 aaPredicted RBP20.85■□□□□ 0.93
SDCBP-204ENST00000447182 BMT2Q1RMZ1 405 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 PRR5LQ6MZQ0 368 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 POTEGQ6S5H5 508 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 POTEEQ6S8J3 1075 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 SYT2Q8N9I0 419 aaPredicted RBP20.85■□□□□ 0.93
SDCBP-204ENST00000447182 CRYGNQ8WXF5 182 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 ANO3Q9BYT9 981 aa20.85■□□□□ 0.93
SDCBP-204ENST00000447182 METTL14Q9HCE5 456 aaKnown RBP20.85■□□□□ 0.93
SDCBP-204ENST00000447182 NOC2LQ9Y3T9 749 aaKnown RBP20.85■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L15C9J2P7 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L13C9JLJ4 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L11C9JVI0 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L18D6R9N7 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L22D6RA61 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L17D6RBQ6 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L19D6RCP7 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L20D6RJB6 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 SLC16A3O15427 465 aaKnown RBP20.84■□□□□ 0.93
SDCBP-204ENST00000447182 SHMT1P34896 483 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L24Q0WX57 530 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 TRAPPC3LQ5T215 181 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 SWT1Q5T5J6 900 aaKnown RBP20.84■□□□□ 0.93
SDCBP-204ENST00000447182 USP17L6PQ6QN14 398 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 KCTD1Q719H9 257 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 VPS36Q86VN1 386 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 CATSPER3Q86XQ3 398 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 C3orf20Q8ND61 904 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 CEP89Q96ST8 783 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 SLITRK6Q9H5Y7 841 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 DDX4Q9NQI0 724 aaKnown RBP20.84■□□□□ 0.93
SDCBP-204ENST00000447182 SUGT1Q9Y2Z0 365 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 GTPBP10A4D1E9 387 aaKnown RBP20.84■□□□□ 0.93
SDCBP-204ENST00000447182 TBX3O15119 743 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 RPA1P27694 616 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 STAT3P40763 770 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 AP3B2Q13367 1082 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 MTMR3Q13615 1198 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 SYCE1Q8N0S2 351 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 ETNPPLQ8TBG4 499 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 TBC1D16Q8TBP0 767 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 SEC14L1Q92503 715 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 GOLPH3Q9H4A6 298 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 ZHX3Q9H4I2 956 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 SIX2Q9NPC8 291 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 POLLQ9UGP5 575 aa20.84■□□□□ 0.93
SDCBP-204ENST00000447182 H2AFZP0C0S5 128 aa20.83■□□□□ 0.93
SDCBP-204ENST00000447182 HNRNPH1P31943 449 aaKnown RBP20.83■□□□□ 0.93
SDCBP-204ENST00000447182 RUFY4Q6ZNE9 571 aa20.83■□□□□ 0.93
SDCBP-204ENST00000447182 H2AFVQ71UI9 128 aa20.83■□□□□ 0.93
SDCBP-204ENST00000447182 PEX26Q7Z412 305 aa20.83■□□□□ 0.93
SDCBP-204ENST00000447182 SFR1Q86XK3 245 aa20.83■□□□□ 0.93
SDCBP-204ENST00000447182 ERMNQ8TAM6 284 aa20.83■□□□□ 0.93
SDCBP-204ENST00000447182 TYW1Q9NV66 732 aaKnown RBP20.83■□□□□ 0.93
SDCBP-204ENST00000447182 DNM3Q9UQ16 869 aa20.83■□□□□ 0.93
SDCBP-204ENST00000447182 STK24Q9Y6E0 443 aa20.83■□□□□ 0.93
SDCBP-204ENST00000447182 BBOX1O75936 387 aa20.83■□□□□ 0.92
SDCBP-204ENST00000447182 AKAP3O75969 853 aa20.83■□□□□ 0.92
SDCBP-204ENST00000447182 GFPT2O94808 682 aa20.83■□□□□ 0.92
SDCBP-204ENST00000447182 USP8P40818 1118 aa20.83■□□□□ 0.92
SDCBP-204ENST00000447182 ZNF844Q08AG5 666 aa20.83■□□□□ 0.92
SDCBP-204ENST00000447182 QRICH1Q2TAL8 776 aa20.83■□□□□ 0.92
SDCBP-204ENST00000447182 MCTP2Q6DN12 878 aa20.83■□□□□ 0.92
SDCBP-204ENST00000447182 RBM17Q96I25 401 aaKnown RBP20.83■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms