RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 MTHFD1LQ6UB35 978 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 CCDC148Q8NFR7 591 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 BICD2Q8TD16 824 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 GDPD5Q8WTR4 605 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 ASB2Q96Q27 587 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 C17orf80Q9BSJ5 609 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 SH3GLB2Q9NR46 395 aa23.57■■□□□ 1.36
SDC1-205ENST00000447124 BACH1O14867 736 aa23.56■■□□□ 1.36
SDC1-205ENST00000447124 KLRC1P26715 233 aa23.56■■□□□ 1.36
SDC1-205ENST00000447124 NLRP5P59047 1200 aa23.56■■□□□ 1.36
SDC1-205ENST00000447124 TMEM62Q0P6H9 643 aa23.56■■□□□ 1.36
SDC1-205ENST00000447124 TNPO1Q92973 898 aaKnown RBP23.56■■□□□ 1.36
SDC1-205ENST00000447124 AIFM3Q96NN9 605 aa23.56■■□□□ 1.36
SDC1-205ENST00000447124 ZNF302Q9NR11 478 aa23.56■■□□□ 1.36
SDC1-205ENST00000447124 TBC1D22BQ9NU19 505 aa23.56■■□□□ 1.36
SDC1-205ENST00000447124 ZBTB42B2RXF5 422 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 HBP1O60381 514 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 SLC26A2P50443 739 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 MRPS5P82675 430 aaKnown RBP23.55■■□□□ 1.36
SDC1-205ENST00000447124 NPY5RQ15761 445 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 ERICH6BQ5W0A0 696 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 FAM160B1Q5W0V3 765 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 MIS18BP1Q6P0N0 1132 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 PDXDC2PQ6P474 469 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 RTN4RL1Q86UN2 441 aaPredicted RBP23.55■■□□□ 1.36
SDC1-205ENST00000447124 ATP8B4Q8TF62 1192 aa23.55■■□□□ 1.36
SDC1-205ENST00000447124 SYMPKQ92797 1274 aaKnown RBP23.55■■□□□ 1.36
SDC1-205ENST00000447124 MAFBQ9Y5Q3 323 aaPredicted RBP23.55■■□□□ 1.36
SDC1-205ENST00000447124 SMIM35A0A1B0GVV1 85 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 M0R2N6 131 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 DTNBO60941 627 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 CD52P31358 61 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 SETQ01105 290 aaPredicted RBP23.54■■□□□ 1.36
SDC1-205ENST00000447124 IER5Q5VY09 327 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 ZNF746Q6NUN9 644 aaPredicted RBP23.54■■□□□ 1.36
SDC1-205ENST00000447124 TSHZ1Q6ZSZ6 1077 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 TRIM22Q8IYM9 498 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 LMCD1Q9NZU5 365 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 PCDHA4Q9UN74 947 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 TRPV2Q9Y5S1 764 aa23.54■■□□□ 1.36
SDC1-205ENST00000447124 CPLX1O14810 134 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 MSH4O15457 936 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 DEXIO95424 95 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 USP11P51784 963 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 TFF2Q03403 129 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 SKIV2LQ15477 1246 aaKnown RBP23.53■■□□□ 1.36
SDC1-205ENST00000447124 KIAA0319LQ8IZA0 1049 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 NME8Q8N427 588 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 LINC01599Q8WXQ3 324 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 YME1L1Q96TA2 773 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 CELF4Q9BZC1 486 aaKnown RBP23.53■■□□□ 1.36
SDC1-205ENST00000447124 CDHR5Q9HBB8 845 aa23.53■■□□□ 1.36
SDC1-205ENST00000447124 SIP14410 1827 aa23.52■■□□□ 1.36
SDC1-205ENST00000447124 RPLP2P05387 115 aaKnown RBP23.52■■□□□ 1.36
SDC1-205ENST00000447124 SCRN1Q12765 414 aa23.52■■□□□ 1.36
SDC1-205ENST00000447124 ZNF484Q5JVG2 852 aa23.52■■□□□ 1.36
SDC1-205ENST00000447124 TBCKQ8TEA7 893 aa23.52■■□□□ 1.36
SDC1-205ENST00000447124 GJA10Q969M2 543 aa23.52■■□□□ 1.36
SDC1-205ENST00000447124 TSPYL2Q9H2G4 693 aaPredicted RBP23.52■■□□□ 1.36
SDC1-205ENST00000447124 TPCN1Q9ULQ1 816 aa23.52■■□□□ 1.36
SDC1-205ENST00000447124 PCDHA10Q9Y5I2 948 aa23.52■■□□□ 1.36
SDC1-205ENST00000447124 SQORQ9Y6N5 450 aa23.52■■□□□ 1.36
SDC1-205ENST00000447124 KRT76Q01546 638 aa23.51■■□□□ 1.35
SDC1-205ENST00000447124 EPC2Q52LR7 807 aa23.51■■□□□ 1.35
SDC1-205ENST00000447124 TRMT1LQ7Z2T5 733 aaKnown RBP23.51■■□□□ 1.35
SDC1-205ENST00000447124 BLIDQ8IZY5 108 aa23.51■■□□□ 1.35
SDC1-205ENST00000447124 FBXO22Q8NEZ5 403 aa23.51■■□□□ 1.35
SDC1-205ENST00000447124 GABBR1Q9UBS5 961 aa23.51■■□□□ 1.35
SDC1-205ENST00000447124 KDM3AQ9Y4C1 1321 aa23.51■■□□□ 1.35
SDC1-205ENST00000447124 TTC3P53804 2025 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 PSAPP07602 524 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 BMP1P13497 986 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 SMAP1Q8IYB5 467 aaPredicted RBP23.5■■□□□ 1.35
SDC1-205ENST00000447124 CRIPAKQ8N1N5 446 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 SLC5A5Q92911 643 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 IL17RAQ96F46 866 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 RC3H2Q9HBD1 1191 aaKnown RBP23.5■■□□□ 1.35
SDC1-205ENST00000447124 PADI3Q9ULW8 664 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 IGSF9BQ9UPX0 1349 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 BRWD1Q9NSI6 2320 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 NCOR1O75376 2440 aa23.5■■□□□ 1.35
SDC1-205ENST00000447124 LINC00271P0C7V0 271 aa23.49■■□□□ 1.35
SDC1-205ENST00000447124 TMEM192Q8IY95 271 aa23.49■■□□□ 1.35
SDC1-205ENST00000447124 CKAP2LQ8IYA6 745 aa23.49■■□□□ 1.35
SDC1-205ENST00000447124 DAGLBQ8NCG7 672 aa23.49■■□□□ 1.35
SDC1-205ENST00000447124 BBXQ8WY36 941 aaPredicted RBP23.49■■□□□ 1.35
SDC1-205ENST00000447124 TMX1Q9H3N1 280 aa23.49■■□□□ 1.35
SDC1-205ENST00000447124 KCNJ14Q9UNX9 436 aa23.49■■□□□ 1.35
SDC1-205ENST00000447124 MYO7AQ13402 2215 aa23.49■■□□□ 1.35
SDC1-205ENST00000447124 COL1A2P08123 1366 aa23.49■■□□□ 1.35
SDC1-205ENST00000447124 CYP3A7-CYP3A51PA0A087WV96 503 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 M0QZ92 97 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 ZNF862O60290 1169 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 PFKFB2O60825 505 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 CTDNEP1O95476 244 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 TDP2O95551 362 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 C22orf31O95567 290 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 CYP3A7P24462 503 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 TMEM266Q2M3C6 531 aa23.48■■□□□ 1.35
SDC1-205ENST00000447124 Q4G0T1 1027 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms