RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 PSEN2P49810 448 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 GRB10Q13322 594 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 XKR3Q5GH77 459 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 POTEBQ6S5H4 581 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 ANKLE1Q8NAG6 615 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 MRPS27Q92552 414 aaKnown RBP17.66■□□□□ 0.42
USP40-206ENST00000443711 KAT2BQ92831 832 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 PNMA5Q96PV4 448 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 NACC1Q96RE7 527 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 KIAA1024Q9UPX6 916 aa17.66■□□□□ 0.42
USP40-206ENST00000443711 DDX11L8A8MPP1 907 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 HAS3O00219 553 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 OATP04181 439 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 MARK3P27448 753 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 PRKCEQ02156 737 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 MFSD10Q14728 455 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 KARSQ15046 597 aaKnown RBP17.65■□□□□ 0.42
USP40-206ENST00000443711 PLCB4Q15147 1175 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 ECM1Q16610 540 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 KIAA0753Q2KHM9 967 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 RRAGBQ5VZM2 374 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 CCDC73Q6ZRK6 1079 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 OTUD6AQ7L8S5 288 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 FSIP1Q8NA03 581 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 ATP8B4Q8TF62 1192 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 BBXQ8WY36 941 aaPredicted RBP17.65■□□□□ 0.42
USP40-206ENST00000443711 VTI1AQ96AJ9 217 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 GLT1D1Q96MS3 346 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 PLIN2Q99541 437 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 PYM1Q9BRP8 204 aaKnown RBP17.65■□□□□ 0.42
USP40-206ENST00000443711 DDX19AQ9NUU7 478 aaKnown RBP17.65■□□□□ 0.42
USP40-206ENST00000443711 WRAP73Q9P2S5 460 aaPredicted RBP17.65■□□□□ 0.42
USP40-206ENST00000443711 DNM3Q9UQ16 869 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 SCN10AQ9Y5Y9 1956 aa17.65■□□□□ 0.42
USP40-206ENST00000443711 LOXHD1Q8IVV2 1947 aa17.64■□□□□ 0.42
USP40-206ENST00000443711 FAM237AA0A1B0GTK4 181 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 A0A1B0GVL5 298 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 HBP1O60381 514 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 GADD45BO75293 160 aaPredicted RBP17.64■□□□□ 0.41
USP40-206ENST00000443711 STBD1O95210 358 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 CHMP4BP1P59074 171 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 UBE2HP62256 183 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 TMEM119Q4V9L6 283 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 POTEGQ6S5H5 508 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 PANK2Q9BZ23 570 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 RNPEPQ9H4A4 650 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 ANKEF1Q9NU02 776 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 KCNH3Q9ULD8 1083 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 TRPC6Q9Y210 931 aa17.64■□□□□ 0.41
USP40-206ENST00000443711 A0A1W2PQ45 241 aaPredicted RBP17.63■□□□□ 0.41
USP40-206ENST00000443711 A0A1W2PQY0 241 aa17.63■□□□□ 0.41
USP40-206ENST00000443711 PFKFB1P16118 471 aa17.63■□□□□ 0.41
USP40-206ENST00000443711 PLCG1P19174 1290 aa17.63■□□□□ 0.41
USP40-206ENST00000443711 YWHABP31946 246 aaKnown RBP17.63■□□□□ 0.41
USP40-206ENST00000443711 TRMT1LQ7Z2T5 733 aaKnown RBP17.63■□□□□ 0.41
USP40-206ENST00000443711 PDILTQ8N807 584 aa17.63■□□□□ 0.41
USP40-206ENST00000443711 ABHD8Q96I13 439 aa17.63■□□□□ 0.41
USP40-206ENST00000443711 NIFKQ9BYG3 293 aaKnown RBP17.63■□□□□ 0.41
USP40-206ENST00000443711 LMBRD1Q9NUN5 540 aa17.63■□□□□ 0.41
USP40-206ENST00000443711 STK17AQ9UEE5 414 aa17.63■□□□□ 0.41
USP40-206ENST00000443711 DBR1Q9UK59 544 aaKnown RBP17.63■□□□□ 0.41
USP40-206ENST00000443711 HPSEQ9Y251 543 aa17.63■□□□□ 0.41
USP40-206ENST00000443711 EYA4O95677 639 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 MCM4P33991 863 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 STAT6P42226 847 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 PSMC6P62333 389 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 NBPF20Q3BBV1 942 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 ZNF484Q5JVG2 852 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 ANO5Q75V66 913 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 C7orf31Q8N865 590 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 IQUBQ8NA54 791 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 PIGOQ8TEQ8 1089 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 CCDC43Q96MW1 224 aaKnown RBP17.62■□□□□ 0.41
USP40-206ENST00000443711 SEZ6LQ9BYH1 1024 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 STARD7Q9NQZ5 370 aa17.62■□□□□ 0.41
USP40-206ENST00000443711 SEPT9Q9UHD8 586 aaPredicted RBP17.62■□□□□ 0.41
USP40-206ENST00000443711 A0A087WWV3 80 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 A0A087X0B3 334 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 RRN3P2A6NIE6 340 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 E9PMD0 336 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 ZBTB39O15060 712 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 POLR2DO15514 142 aaKnown RBP17.61■□□□□ 0.41
USP40-206ENST00000443711 CAPN15O75808 1086 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 SMIM10L2AP0DMW4 78 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 SMIM10L2BP0DMW5 78 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 INSRRP14616 1297 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 SYKP43405 635 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 MNX1P50219 401 aaPredicted RBP17.61■□□□□ 0.41
USP40-206ENST00000443711 NDUFA8P51970 172 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 ITGA7Q13683 1181 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 XKR9Q5GH70 373 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 KCNK18Q7Z418 384 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 DHX58Q96C10 678 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 CUEDC2Q9H467 287 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 GOLPH3LQ9H4A5 285 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 USP25Q9UHP3 1055 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 PPME1Q9Y570 386 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 COL1A2P08123 1366 aa17.61■□□□□ 0.41
USP40-206ENST00000443711 A0A0U1RQG5 324 aaPredicted RBP17.6■□□□□ 0.41
USP40-206ENST00000443711 GNAT1P11488 350 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms