RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 JAK3P52333 1124 aa17.16■□□□□ 0.34
LIMS3-201ENST00000437679 IKBKEQ14164 716 aa17.16■□□□□ 0.34
LIMS3-201ENST00000437679 FAM26DQ5JW98 314 aa17.16■□□□□ 0.34
LIMS3-201ENST00000437679 KRT40Q6A162 431 aa17.16■□□□□ 0.34
LIMS3-201ENST00000437679 PPP4R3AQ6IN85 833 aa17.16■□□□□ 0.34
LIMS3-201ENST00000437679 DNAJB3Q8WWF6 145 aa17.16■□□□□ 0.34
LIMS3-201ENST00000437679 TTYH1Q9H313 450 aaPredicted RBP17.16■□□□□ 0.34
LIMS3-201ENST00000437679 MAFBQ9Y5Q3 323 aaPredicted RBP17.16■□□□□ 0.34
LIMS3-201ENST00000437679 MYO9BQ13459 2157 aa17.16■□□□□ 0.34
LIMS3-201ENST00000437679 COL1A2P08123 1366 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 CCNT1O60563 726 aaKnown RBP17.15■□□□□ 0.34
LIMS3-201ENST00000437679 PSMD10O75832 226 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 HMGN5P82970 282 aaKnown RBP17.15■□□□□ 0.34
LIMS3-201ENST00000437679 NR5A1Q13285 461 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 SAFBQ15424 915 aaKnown RBP eCLIP17.15■□□□□ 0.34
LIMS3-201ENST00000437679 ZNF484Q5JVG2 852 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 DIS3L2Q8IYB7 885 aaKnown RBP17.15■□□□□ 0.34
LIMS3-201ENST00000437679 FAM184AQ8NB25 1140 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 RDM1Q8NG50 284 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 ETNPPLQ8TBG4 499 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 TRAPPC12Q8WVT3 735 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 BBXQ8WY36 941 aaPredicted RBP17.15■□□□□ 0.34
LIMS3-201ENST00000437679 SEPT8Q92599 483 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 GJA10Q969M2 543 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 FAM167AQ96KS9 214 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 UNC45AQ9H3U1 944 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 PCDHA2Q9Y5H9 948 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 PCDHA11Q9Y5I1 949 aa17.15■□□□□ 0.34
LIMS3-201ENST00000437679 GBF1Q92538 1859 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 WDR81Q562E7 1941 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 BTBD18B2RXH4 712 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 SLC37A4O43826 429 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 MARCH6O60337 910 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 ATP4AP20648 1035 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 RABGGTBP53611 331 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 WDR5P61964 334 aaKnown RBP17.14■□□□□ 0.33
LIMS3-201ENST00000437679 PLEKHG4Q58EX7 1191 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 MTHFD1LQ6UB35 978 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 TRMT1LQ7Z2T5 733 aaKnown RBP17.14■□□□□ 0.33
LIMS3-201ENST00000437679 MIER3Q7Z3K6 550 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 DBF4BQ8NFT6 615 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 TNFRSF25Q93038 417 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 C8orf76Q96K31 380 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 FAM20AQ96MK3 541 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 GUCD1Q96NT3 240 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 FAM49AQ9H0Q0 323 aaPredicted RBP17.14■□□□□ 0.33
LIMS3-201ENST00000437679 ZNF576Q9H609 170 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 CEP131Q9UPN4 1083 aa17.14■□□□□ 0.33
LIMS3-201ENST00000437679 SMIM35A0A1B0GVV1 85 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 KIF28PB7ZC32 967 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 M0QZ92 97 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 CHRNA1P02708 482 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 KLRC1P26715 233 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 MRPS6P82932 125 aaKnown RBP17.13■□□□□ 0.33
LIMS3-201ENST00000437679 EARS2Q5JPH6 523 aaKnown RBP17.13■□□□□ 0.33
LIMS3-201ENST00000437679 IER5Q5VY09 327 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 HERC6Q8IVU3 1022 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 ZBTB10Q96DT7 871 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 TBC1D32Q96NH3 1257 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 NKX2-4Q9H2Z4 354 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 SLC28A3Q9HAS3 691 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 NRBP2Q9NSY0 501 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 STXBP5LQ9Y2K9 1186 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 YBX2Q9Y2T7 364 aaKnown RBP17.13■□□□□ 0.33
LIMS3-201ENST00000437679 IGSF9BQ9UPX0 1349 aa17.13■□□□□ 0.33
LIMS3-201ENST00000437679 FAM205CA6NFA0 338 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 TBX3O15119 743 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 BAG4O95429 457 aaKnown RBP17.12■□□□□ 0.33
LIMS3-201ENST00000437679 GUCY1B3Q02153 619 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 MGAT3Q09327 533 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 TCTN1Q2MV58 587 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 NME8Q8N427 588 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 APBB2Q92870 758 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 CDX2Q99626 313 aaPredicted RBP17.12■□□□□ 0.33
LIMS3-201ENST00000437679 KCNMB3Q9NPA1 279 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 CDY2AQ9Y6F7 541 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 EVPLQ92817 2033 aa17.12■□□□□ 0.33
LIMS3-201ENST00000437679 MICAL3Q7RTP6 2002 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 OATP04181 439 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 GHRP10912 638 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 MCM2P49736 904 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 DEFB103AP81534 67 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 PRKCEQ02156 737 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 B3GNT9Q6UX72 402 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 ZBED2Q9BTP6 218 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 IFIH1Q9BYX4 1025 aaKnown RBP17.11■□□□□ 0.33
LIMS3-201ENST00000437679 OSBPL7Q9BZF2 842 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 TRPV2Q9Y5S1 764 aa17.11■□□□□ 0.33
LIMS3-201ENST00000437679 ZBTB42B2RXF5 422 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 MAGEB2O15479 319 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 TLL1O43897 1013 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 ZNF862O60290 1169 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 AMHP03971 560 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 MYOGP15173 224 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 TMEM62Q0P6H9 643 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 PPP2R5CQ13362 524 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 LPIN1Q14693 890 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 GRIN2CQ14957 1233 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 UGCGQ16739 394 aa17.1■□□□□ 0.33
LIMS3-201ENST00000437679 PPP2R2DQ66LE6 453 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms