RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TMEM209Q96SK2 561 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 EPB41L4AQ9HCS5 686 aaPredicted RBP5.77□□□□□ -1.49
USP40-204ENST00000427947 DLL4Q9NR61 685 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 BTBD7Q9P203 1132 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 KCTD3Q9Y597 815 aa5.77□□□□□ -1.49
USP40-204ENST00000427947 NPIPB6E9PJ23 425 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 RFXAPO00287 272 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 PTGS1P23219 599 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 THBS2P35442 1172 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 RAP1GAPP47736 663 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 CDKN1CP49918 316 aaPredicted RBP5.76□□□□□ -1.49
USP40-204ENST00000427947 LINC00310P59036 64 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 ZNF124Q15973 351 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 DDB1Q16531 1140 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 ESRP1Q6NXG1 681 aaKnown RBP5.76□□□□□ -1.49
USP40-204ENST00000427947 HDGFL2Q7Z4V5 671 aaPredicted RBP5.76□□□□□ -1.49
USP40-204ENST00000427947 DTX3Q8N9I9 347 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 KYQ8NBH2 561 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 IGDCC4Q8TDY8 1250 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 FNIP1Q8TF40 1166 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 CLIC6Q96NY7 704 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 INCENPQ9NQS7 918 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 UCKL1Q9NWZ5 548 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 ARHGAP20Q9P2F6 1191 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 NOP58Q9Y2X3 529 aaKnown RBP5.76□□□□□ -1.49
USP40-204ENST00000427947 ASB1Q9Y576 335 aa5.76□□□□□ -1.49
USP40-204ENST00000427947 PRAMEF22A3QJZ6 481 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 GPR39O43194 453 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 GLRBP48167 497 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 HTRA3P83110 453 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 SMAD3P84022 425 aaKnown RBP5.75□□□□□ -1.49
USP40-204ENST00000427947 SMAD2Q15796 467 aaKnown RBP5.75□□□□□ -1.49
USP40-204ENST00000427947 ZNF385BQ569K4 471 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 BROXQ5VW32 411 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 PRAMEF18Q5VWM3 479 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 CILP2Q8IUL8 1156 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 LINC00482Q8N8I6 264 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 SLC5A5Q92911 643 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 SCYL1Q96KG9 808 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 BRINP2Q9C0B6 783 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 ZFP69BQ9UJL9 534 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 CROTQ9UKG9 612 aa5.75□□□□□ -1.49
USP40-204ENST00000427947 GOLGA6L22H0YM25 854 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 ULK1O75385 1050 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 CDK11BP21127 795 aaKnown RBP5.74□□□□□ -1.49
USP40-204ENST00000427947 ANAPC15P60006 121 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 RTP5Q14D33 572 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 EPHA7Q15375 998 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 TERF2Q15554 542 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 RNF219Q5W0B1 726 aaPredicted RBP5.74□□□□□ -1.49
USP40-204ENST00000427947 IQSEC1Q6DN90 963 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 RTN4RL1Q86UN2 441 aaPredicted RBP5.74□□□□□ -1.49
USP40-204ENST00000427947 NME9Q86XW9 330 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 SPATS2Q86XZ4 545 aaKnown RBP5.74□□□□□ -1.49
USP40-204ENST00000427947 ZZZ3Q8IYH5 903 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 TTLL6Q8N841 843 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 PRPF38AQ8NAV1 312 aaKnown RBP5.74□□□□□ -1.49
USP40-204ENST00000427947 RTF1Q92541 710 aaKnown RBP5.74□□□□□ -1.49
USP40-204ENST00000427947 FOXRED1Q96CU9 486 aaPredicted RBP5.74□□□□□ -1.49
USP40-204ENST00000427947 C16orf92Q96LL3 132 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 WRNIP1Q96S55 665 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 TACO1Q9BSH4 297 aaKnown RBP5.74□□□□□ -1.49
USP40-204ENST00000427947 MS4A5Q9H3V2 200 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 ZMAT4Q9H898 229 aa5.74□□□□□ -1.49
USP40-204ENST00000427947 UBA6A0AVT1 1052 aaPredicted RBP5.73□□□□□ -1.49
USP40-204ENST00000427947 RAB11FIP3O75154 756 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 FBXO21O94952 628 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 MPIG6BO95866 241 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 C8AP07357 584 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 CD40P25942 277 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 LSP1P33241 339 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 TXKP42681 527 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 EVA1CP58658 441 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 IGBP1P78318 339 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 PHC1P78364 1004 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 FAM50AQ14320 339 aaKnown RBP5.73□□□□□ -1.49
USP40-204ENST00000427947 STPG3Q8N7X2 389 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 C7orf31Q8N865 590 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 COG1Q8WTW3 980 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 E2F7Q96AV8 911 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 AMNQ9BXJ7 453 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 GALNT8Q9NY28 637 aa5.73□□□□□ -1.49
USP40-204ENST00000427947 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.72□□□□□ -1.49
USP40-204ENST00000427947 LCHNA4D1U4 455 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 NUAK1O60285 661 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 CYP7B1O75881 506 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 IL18BPO95998 194 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 PRLP01236 227 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 AFF3P51826 1226 aaKnown RBP5.72□□□□□ -1.49
USP40-204ENST00000427947 SLC6A3Q01959 620 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 ALDH6A1Q02252 535 aaKnown RBP5.72□□□□□ -1.49
USP40-204ENST00000427947 LRRC32Q14392 662 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 VWA3BQ502W6 1294 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 TTC38Q5R3I4 469 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 GPR158Q5T848 1215 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 PRAMEF9Q5VWM5 478 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 LRSAM1Q6UWE0 723 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 TTLL7Q6ZT98 887 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 SAPCD2Q86UD0 394 aa5.72□□□□□ -1.49
USP40-204ENST00000427947 ZNF610Q8N9Z0 462 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms