RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 GOLGA6CA6NDK9 693 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 TRIM66O15016 1216 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 PPFIA4O75335 1185 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 GOLGA6DP0CG33 693 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 STAT3P40763 770 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 NAP1L1P55209 391 aaKnown RBP15.69■□□□□ 0.1
LIG1-202ENST00000427526 DLGAP5Q15398 846 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 ANO3Q9BYT9 981 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 LUC7LQ9NQ29 371 aaKnown RBP15.69■□□□□ 0.1
LIG1-202ENST00000427526 GDF3Q9NR23 364 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 GOLGA6AQ9NYA3 693 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 PCDHA1Q9Y5I3 950 aa15.69■□□□□ 0.1
LIG1-202ENST00000427526 MEIS2O14770 477 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 KCNH2Q12809 1159 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 MOXD1Q6UVY6 613 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 ZNF70Q9UC06 446 aaPredicted RBP15.68■□□□□ 0.1
LIG1-202ENST00000427526 GLI1P08151 1106 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 EPB41P11171 864 aaKnown RBP15.68■□□□□ 0.1
LIG1-202ENST00000427526 CASP5P51878 434 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 RBM26Q5T8P6 1007 aaKnown RBP15.68■□□□□ 0.1
LIG1-202ENST00000427526 ALS2CLQ60I27 953 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 CDAN1Q8IWY9 1227 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 SLFN12Q8IYM2 578 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 OGFOD1Q8N543 542 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 ETNPPLQ8TBG4 499 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 SLC16A10Q8TF71 515 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 P2RX7Q99572 595 aaKnown RBP15.68■□□□□ 0.1
LIG1-202ENST00000427526 ADAMTS1Q9UHI8 967 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 KLHL30Q0D2K2 578 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 NNTQ13423 1086 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 RAPGEF1Q13905 1077 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 GRIPAP1Q4V328 841 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 CATSPER3Q86XQ3 398 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 FAM133AQ8N9E0 248 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.68■□□□□ 0.1
LIG1-202ENST00000427526 TRAF3IP3Q9Y228 551 aa15.68■□□□□ 0.1
LIG1-202ENST00000427526 A0A1W2PRG0 241 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 GRID2IPA4D2P6 1211 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 POTEFA5A3E0 1075 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 BTNL10A8MVZ5 291 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 GOLGA8KD6RF30 607 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 CETN3O15182 167 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 FTCDO95954 541 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 POTEIP0CG38 1075 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 HOXD13P35453 343 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 GIT2Q14161 759 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 KIAA0753Q2KHM9 967 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 POTEGQ6S5H5 508 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 POTEEQ6S8J3 1075 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 IRF2BP2Q7Z5L9 587 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 DCAF4Q8WV16 495 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 INPP4AQ96PE3 977 aaPredicted RBP15.67■□□□□ 0.1
LIG1-202ENST00000427526 PACSIN1Q9BY11 444 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 TMOD2Q9NZR1 351 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 NDUFB10O96000 172 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 PSMC6P62333 389 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 EPM2AIP1Q7L775 607 aaPredicted RBP15.67■□□□□ 0.1
LIG1-202ENST00000427526 SPICE1Q8N0Z3 855 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 VEZTQ9HBM0 779 aa15.67■□□□□ 0.1
LIG1-202ENST00000427526 SPATA31C1P0DKV0 1188 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 NR2F2P24468 414 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 IRAK1P51617 712 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 ARID5AQ03989 594 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 ASIC2Q16515 512 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 CDC37Q16543 378 aaPredicted RBP15.66■□□□□ 0.1
LIG1-202ENST00000427526 FRMD5Q7Z6J6 570 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 IFT20Q8IY31 132 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 C10orf67Q8IYJ2 551 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 CNPY4Q8N129 248 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.66■□□□□ 0.1
LIG1-202ENST00000427526 RASSF4Q9H2L5 321 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 PLCB1Q9NQ66 1216 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 RSPH14Q9UHP6 348 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 HDAC9Q9UKV0 1011 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 ZNRF3Q9ULT6 936 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 OPA1O60313 960 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 PPFIA1Q13136 1202 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 AP3B2Q13367 1082 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 NIM1KQ8IY84 436 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 SYT2Q8N9I0 419 aaPredicted RBP15.66■□□□□ 0.1
LIG1-202ENST00000427526 LENG9Q96B70 501 aa15.66■□□□□ 0.1
LIG1-202ENST00000427526 SCAF8Q9UPN6 1271 aaKnown RBP15.66■□□□□ 0.1
LIG1-202ENST00000427526 TBX3O15119 743 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 ACTN1P12814 892 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 TAL1P17542 331 aaPredicted RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 RPA1P27694 616 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 ECE1P42892 770 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 CARSP49589 748 aaKnown RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 ARHGAP4P98171 946 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 PTK2Q05397 1052 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 CXCL9Q07325 125 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 Q4G0T1 1027 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 PPP1R1BQ9UD71 204 aaPredicted RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 SHTN1A0MZ66 631 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 MYCNP04198 464 aaPredicted RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 KRT18P05783 430 aaKnown RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 SLC9A1P19634 815 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 IKQ13123 557 aaPredicted RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 KNOP1Q1ED39 458 aaKnown RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 IQCKQ8N0W5 287 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms