RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 GRB10Q13322 594 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 CCDC6Q16204 474 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 FSCN1Q16658 493 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 IL27RAQ6UWB1 636 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 CLASRPQ8N2M8 674 aaKnown RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 RYBPQ8N488 228 aaPredicted RBP3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 ARMC2Q8NEN0 867 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TEKT4Q8WW24 435 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 FGF11Q92914 225 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 TRPC7Q9HCX4 862 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 GPR108Q9NPR9 543 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 IL17BQ9UHF5 180 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 INTUQ9ULD6 942 aa3.09□□□□□ -1.92
CCDC88A-205ENST00000426576 ANKRD36BQ8N2N9 1353 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 PRR36Q9H6K5 1346 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 TESPA1A2RU30 521 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC30A4O14863 429 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 BAIAP3O94812 1187 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SELPP16109 830 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 MPLP40238 635 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 OR1G1P47890 313 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 PCBP4P57723 403 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SLC20A2Q08357 652 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 RAD51AP2Q09MP3 1159 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 COG2Q14746 738 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 LEXMQ3ZCV2 418 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 C8orf34Q49A92 452 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 CERKLQ49MI3 558 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 TBC1D9BQ66K14 1250 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 TMEM92Q6UXU6 159 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 NME9Q86XW9 330 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 PTRH1Q86Y79 214 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 CCDC13Q8IYE1 715 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 FAM26EQ8N5C1 309 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 GOLGA1Q92805 767 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 FOXJ1Q92949 421 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SGIP1Q9BQI5 828 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 YIPF2Q9BWQ6 316 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 CHMP4BQ9H444 224 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SUDS3Q9H7L9 328 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 OSGEPQ9NPF4 335 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SPG21Q9NZD8 308 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 ABI3Q9P2A4 366 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 KCNG1Q9UIX4 513 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 TPCN1Q9ULQ1 816 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 AKAP2Q9Y2D5 859 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 PRG3Q9Y2Y8 225 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 PCDHB5Q9Y5E4 795 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 USP16Q9Y5T5 823 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 WDR97A6NE52 1622 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 COL15A1P39059 1388 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 GOLGA6CA6NDK9 693 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 GOLGA6BA6NDN3 693 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 ANP32CO43423 234 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SMARCA5O60264 1052 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 A1BGP04217 495 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 CENPBP07199 599 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 GOLGA6DP0CG33 693 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 ANXA13P27216 316 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 RPL6Q02878 288 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 CREMQ03060 361 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 TYRO3Q06418 890 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 ST3GAL1Q11201 340 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 ABCB5Q2M3G0 1257 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 FBXO11Q86XK2 927 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 TMEM57Q8N5G2 664 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 BCL7CQ8WUZ0 217 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 CNPPD1Q9BV87 410 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 DCLK3Q9C098 648 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SUGCTQ9HAC7 445 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 GOLGA6AQ9NYA3 693 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 GULP1Q9UBP9 304 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 LSM7Q9UK45 103 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 RBM19Q9Y4C8 960 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 PCDHA1Q9Y5I3 950 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 COMMD10Q9Y6G5 202 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 NUMBLQ9Y6R0 609 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 PHLPP1O60346 1717 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 GAKO14976 1311 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 DIP2BQ9P265 1576 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 TEX51A0A1B0GUA7 166 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 ARVCFO00192 962 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 XPOTO43592 962 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 CKMP06732 381 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 FGFR3P22607 806 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 RNASE9P60153 205 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 VGLL4Q14135 290 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 DGKKQ5KSL6 1271 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 ZFYVE27Q5T4F4 411 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 CNNM4Q6P4Q7 775 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SPATA2LQ8IUW3 424 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 SCYL3Q8IZE3 742 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 WDR83Q9BRX9 315 aaKnown RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 ABHD16BQ9H3Z7 469 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 RWDD1Q9H446 243 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 DACT1Q9NYF0 836 aa3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 USP15Q9Y4E8 981 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 TROQ12816 1431 aaPredicted RBP3.08□□□□□ -1.92
CCDC88A-205ENST00000426576 FANCIQ9NVI1 1328 aa3.07□□□□□ -1.92
CCDC88A-205ENST00000426576 PYCARD-AS1I3L0S3 204 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms