RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 WASHC2AQ641Q2 1341 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 WDR17Q8IZU2 1322 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 NPIPB6E9PJ23 425 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 TMEM253P0C7T8 217 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 YBX1P67809 324 aaKnown RBP3.32□□□□□ -1.88
VPS13A-208ENST00000423463 ACBD5Q5T8D3 534 aaPredicted RBP3.32□□□□□ -1.88
VPS13A-208ENST00000423463 TOM1L2Q6ZVM7 507 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 KRTAP4-12Q9BQ66 201 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 CLDND1Q9NY35 253 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 NPFFR2Q9Y5X5 522 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 MARF1Q9Y4F3 1742 aaKnown RBP3.32□□□□□ -1.88
VPS13A-208ENST00000423463 PIK3C2AO00443 1686 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 CAMTA1Q9Y6Y1 1673 aa3.32□□□□□ -1.88
VPS13A-208ENST00000423463 KIF24Q5T7B8 1368 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 NRKQ7Z2Y5 1582 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 CRYBG1Q9Y4K1 1723 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 TRBV23-1A0A0A0MS06 115 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 TEX51A0A1B0GUA7 166 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 TCAF2A6NFQ2 919 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 FBLN1P23142 703 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 HOXC9P31274 260 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 LIMS1P48059 325 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 MAPKAPK2P49137 400 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 KRT27Q7Z3Y8 459 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 MORC1Q86VD1 984 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 LDHDQ86WU2 507 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 IGDCC3Q8IVU1 814 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 PANK1Q8TE04 598 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 CDIP1Q9H305 208 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 MRPS23Q9Y3D9 190 aaKnown RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 PTCH2Q9Y6C5 1203 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 CRB1P82279 1406 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 ABCA3Q99758 1704 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 NWD2Q9ULI1 1742 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 NFAT5O94916 1531 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 ABCC6O95255 1503 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 COL5A2P05997 1499 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 N4BP3O15049 544 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 SGSM2O43147 1006 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 PEX10O60683 326 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 C6orf222P0C671 652 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 PI3P19957 117 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 GLDCP23378 1020 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 PMLP29590 882 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 RAP1GAPP47736 663 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 RRS1Q15050 365 aaKnown RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 KCNA10Q16322 511 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 IQCEQ6IPM2 695 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 RBM12BQ8IXT5 1001 aaKnown RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 MZB1Q8WU39 189 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 KCNJ15Q99712 375 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 GOLGA2P5Q9HBQ8 144 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 CD320Q9NPF0 282 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 GPR27Q9NS67 375 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 POLKQ9UBT6 870 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 SMG5Q9UPR3 1016 aaKnown RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 PHRF1Q9P1Y6 1649 aaKnown RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 RGS12O14924 1447 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 BLMP54132 1417 aaPredicted RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.31□□□□□ -1.88
VPS13A-208ENST00000423463 RTL1A6NKG5 1358 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 NPC1L1Q9UHC9 1359 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 USP54Q70EL1 1684 aa3.31□□□□□ -1.88
VPS13A-208ENST00000423463 EXOC5O00471 708 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 SEMA7AO75326 666 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 LINC00310P59036 64 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 LSAMPQ13449 338 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 NR1I3Q14994 352 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 OLFML2BQ68BL8 750 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 STYK1Q6J9G0 422 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 MILR1Q7Z6M3 343 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 ALG3Q92685 438 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 MKL1Q969V6 931 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 ZNF669Q96BR6 464 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-208ENST00000423463 PALD1Q9ULE6 856 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 PCDHA5Q9Y5H7 936 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 INSRP06213 1382 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 LMO7Q8WWI1 1683 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 GLI3P10071 1580 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 BUB1BO60566 1050 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-208ENST00000423463 MED14OSP0DP75 135 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 TMEM62Q0P6H9 643 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 CBX2Q14781 532 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-208ENST00000423463 TESK1Q15569 626 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 DDB1Q16531 1140 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 HSP90AB2PQ58FF8 381 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 NOP9Q86U38 636 aaKnown RBP3.3□□□□□ -1.88
VPS13A-208ENST00000423463 MTDHQ86UE4 582 aaKnown RBP3.3□□□□□ -1.88
VPS13A-208ENST00000423463 Q8N1Y9 231 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 NETO2Q8NC67 525 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 DCAF4Q8WV16 495 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 LTV1Q96GA3 475 aaPredicted RBP3.3□□□□□ -1.88
VPS13A-208ENST00000423463 PPP1R16BQ96T49 567 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 IRF2BPLQ9H1B7 796 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 SLC52A2Q9HAB3 445 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 NDOR1Q9UHB4 597 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 PCDHA8Q9Y5H6 950 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 IRAK3Q9Y616 596 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 PLCH1Q4KWH8 1693 aa3.3□□□□□ -1.88
VPS13A-208ENST00000423463 FLT4P35916 1363 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms