RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 CCNE2O96020 404 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 FAM86B2P0C5J1 330 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 RPS6KB1P23443 525 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 GNA11P29992 359 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 AKAP17AQ02040 695 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 FAM43BQ6ZT52 329 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 FIBCD1Q8N539 461 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 ATP8B4Q8TF62 1192 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 CRYGNQ8WXF5 182 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 NECAB3Q96P71 396 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 FTHL17Q9BXU8 183 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 AGXT2Q9BYV1 514 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 UBE2ZQ9H832 354 aaPredicted RBP13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 RC3H2Q9HBD1 1191 aaKnown RBP13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 TCEAL9Q9UHQ7 104 aa13.14□□□□□ -0.31
SQSTM1-203ENST00000422245 KDM3AQ9Y4C1 1321 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 TTC3P53804 2025 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 COL1A2P08123 1366 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 SMIM35A0A1B0GVV1 85 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 DDX39AO00148 427 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 IPO5O00410 1097 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 EPB41L2O43491 1005 aaKnown RBP13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 HBP1O60381 514 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 CD52P31358 61 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 GPM6BQ13491 265 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 PKN1Q16512 942 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 MIS18BP1Q6P0N0 1132 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 MTHFD1LQ6UB35 978 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 ABHD15Q6UXT9 468 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 NME8Q8N427 588 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 BICD2Q8TD16 824 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 TRAPPC12Q8WVT3 735 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 ZBTB10Q96DT7 871 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 C11orf84Q9BUA3 381 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 RNF26Q9BY78 433 aaPredicted RBP13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 ZNF302Q9NR11 478 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 TBC1D22BQ9NU19 505 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 IGSF9BQ9UPX0 1349 aa13.13□□□□□ -0.31
SQSTM1-203ENST00000422245 XIRP2A4UGR9 3374 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 C5orf67F2Z3F1 127 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 ENPP3O14638 875 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 DHX15O43143 795 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 RB1P06400 928 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 IFNAR1P17181 557 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 CTNNB1P35222 781 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 KRT76Q01546 638 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 PAK2Q13177 524 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 ZNF746Q6NUN9 644 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 PDXDC2PQ6P474 469 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 CCDC60Q8IWA6 550 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 SMAP1Q8IYB5 467 aaPredicted RBP13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 LINC01599Q8WXQ3 324 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 ZNF577Q9BSK1 485 aa13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 CELF4Q9BZC1 486 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 AGO3Q9H9G7 860 aaKnown RBP13.12□□□□□ -0.31
SQSTM1-203ENST00000422245 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 CIITAP33076 1130 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 EVCP57679 992 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 TMEM62Q0P6H9 643 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 BTG3Q14201 252 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 NTRK3Q16288 839 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 LEXMQ3ZCV2 418 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 ZNF484Q5JVG2 852 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 NPAS4Q8IUM7 802 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 BANK1Q8NDB2 785 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 CLP1Q92989 425 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 PHKBQ93100 1093 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 ZNF689Q96CS4 500 aaPredicted RBP13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 C1QTNF1Q9BXJ1 281 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 SLC26A6Q9BXS9 759 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 LMAN2LQ9H0V9 348 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 NSUN3Q9H649 340 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 PADI3Q9ULW8 664 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 LOXHD1Q8IVV2 1947 aa13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 MYH9P35579 1960 aaKnown RBP13.11□□□□□ -0.31
SQSTM1-203ENST00000422245 DGKIO75912 1065 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 PSAPP07602 524 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 LINC00271P0C7V0 271 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 STAG3L1P0CL83 205 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 KCNA5P22460 613 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 KLRC1P26715 233 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 BMPR1AP36894 532 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 PUS10Q3MIT2 529 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 PRR16Q569H4 304 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 CKAP2LQ8IYA6 745 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 TRIM22Q8IYM9 498 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 CMTR2Q8IYT2 770 aaKnown RBP13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 BBXQ8WY36 941 aaPredicted RBP13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 FAM167AQ96KS9 214 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 PLVAPQ9BX97 442 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 SH3GLB2Q9NR46 395 aa13.1□□□□□ -0.31
SQSTM1-203ENST00000422245 WDR64B1ANS9 1081 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 ADAMTS3O15072 1205 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 C22orf31O95567 290 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 PDIA3P30101 505 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 COL19A1Q14993 1142 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 TCEAL5Q5H9L2 206 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 ODR4Q5SWX8 454 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 SWSAP1Q6NVH7 229 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 RUFY3Q7L099 469 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms