RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 ZBTB24O43167 697 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-205ENST00000414879 DTNBO60941 627 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 IL1R1P14778 569 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 KNOP1Q1ED39 458 aaKnown RBP12.97□□□□□ -0.33
PTPRF-205ENST00000414879 CCDC110Q8TBZ0 833 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 FAM114A2Q9NRY5 505 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 VPS18Q9P253 973 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 PIK3C2AO00443 1686 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 UBE4BO95155 1302 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 NMT2O60551 498 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 PPM1FP49593 454 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-205ENST00000414879 RBL2Q08999 1139 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 LRRC41Q15345 812 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 MOXD1Q6UVY6 613 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 RNF169Q8NCN4 708 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 RAB3IL1Q8TBN0 382 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 PARK7Q99497 189 aaKnown RBP12.97□□□□□ -0.33
PTPRF-205ENST00000414879 RIT2Q99578 217 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 MYOZ2Q9NPC6 264 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.97□□□□□ -0.331e-6■□□□□ 9.9
PTPRF-205ENST00000414879 FAM205AQ6ZU69 1335 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 GOLGA8CPA6NN73 597 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 FBXL16Q8N461 479 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 SYNPO2Q9UMS6 1093 aa12.97□□□□□ -0.33
PTPRF-205ENST00000414879 A0A1W2PQC6 194 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 ZMYND12Q9H0C1 365 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 PRKAG2Q9UGJ0 569 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 TYW5A2RUC4 315 aaKnown RBP12.96□□□□□ -0.33
PTPRF-205ENST00000414879 CLDN3O15551 220 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 PPFIA4O75335 1185 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 SRGNP10124 158 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 PEX3P56589 373 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 KRT31Q15323 416 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 BZW1Q7L1Q6 419 aaKnown RBP12.96□□□□□ -0.33
PTPRF-205ENST00000414879 SMAP1Q8IYB5 467 aaPredicted RBP12.96□□□□□ -0.33
PTPRF-205ENST00000414879 NR3C1P04150 777 aa12.96□□□□□ -0.33
PTPRF-205ENST00000414879 TFAMQ00059 246 aaKnown RBP12.96□□□□□ -0.33
PTPRF-205ENST00000414879 PDHBP11177 359 aa12.96□□□□□ -0.34
PTPRF-205ENST00000414879 DPEP1P16444 411 aa12.96□□□□□ -0.34
PTPRF-205ENST00000414879 HOXA10P31260 410 aaPredicted RBP12.96□□□□□ -0.34
PTPRF-205ENST00000414879 BFSP1Q12934 665 aa12.96□□□□□ -0.34
PTPRF-205ENST00000414879 COASYQ13057 564 aa12.96□□□□□ -0.34
PTPRF-205ENST00000414879 C15orf52Q6ZUT6 534 aaKnown RBP12.96□□□□□ -0.34
PTPRF-205ENST00000414879 CATSPER4Q7RTX7 472 aa12.96□□□□□ -0.34
PTPRF-205ENST00000414879 ZNF653Q96CK0 615 aa12.96□□□□□ -0.34
PTPRF-205ENST00000414879 PXDNQ92626 1479 aa12.96□□□□□ -0.34
PTPRF-205ENST00000414879 PSMD14O00487 310 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 PDXKO00764 312 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 ERCC3P19447 782 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 MAPK4P31152 587 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 SLFNL1Q499Z3 407 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 XKR3Q5GH77 459 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 ZNF667Q5HYK9 610 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 ANKRD13AQ8IZ07 590 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 EPB41L4AQ9HCS5 686 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 SLC9A2Q9UBY0 812 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 MIF4GDA9UHW6 222 aaKnown RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 GIPC1O14908 333 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 SLC16A3O15427 465 aaKnown RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 MORC4Q8TE76 937 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 MRPL4Q9BYD3 311 aaKnown RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 DDX41Q9UJV9 622 aaKnown RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 CLIC2O15247 247 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 DGAT1O75907 488 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 CASP7P55210 303 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 PRPSAP1Q14558 356 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 OXER1Q8TDS5 423 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 HVCN1Q96D96 273 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 KAZALD1Q96I82 304 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 DYDC2Q96IM9 177 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 KIF2CQ99661 725 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 SAMSN1Q9NSI8 373 aaKnown RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 ARL1P40616 181 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 DNAJC24Q6P3W2 148 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 TRIM72Q6ZMU5 477 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 FRMD5Q7Z6J6 570 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 FAM83AQ86UY5 434 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 COL23A1Q86Y22 540 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 POTEDQ86YR6 584 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 GRAMD1CQ8IYS0 662 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 OTUD5Q96G74 571 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 UBE2TQ9NPD8 197 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 IPO11Q9UI26 975 aaKnown RBP12.95□□□□□ -0.34
PTPRF-205ENST00000414879 STRIP2Q9ULQ0 834 aa12.95□□□□□ -0.34
PTPRF-205ENST00000414879 POTEMA6NI47 508 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 ASAP2O43150 1006 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 MFAP3LO75121 409 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 SRGAP2BP0DMP2 458 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 CDC25AP30304 524 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 MXRA7P84157 204 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 SFR1Q86XK3 245 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 CCT6BQ92526 530 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 PPP1R13BQ96KQ4 1090 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 EIF2AK1Q9BQI3 630 aaKnown RBP12.94□□□□□ -0.34
PTPRF-205ENST00000414879 KATNAL1Q9BW62 490 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 MRIQ9BWK5 157 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 FBXO2Q9UK22 296 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-205ENST00000414879 PGRMC1O00264 195 aaKnown RBP12.94□□□□□ -0.34
PTPRF-205ENST00000414879 MAGEB2O15479 319 aa12.94□□□□□ -0.34
PTPRF-205ENST00000414879 NDUFA10O95299 355 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms