RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 PRPHP41219 470 aa16.44■□□□□ 0.22
LIMS1-206ENST00000414829 TXKP42681 527 aa16.44■□□□□ 0.22
LIMS1-206ENST00000414829 ADAM17P78536 824 aa16.44■□□□□ 0.22
LIMS1-206ENST00000414829 ZNF174Q15697 407 aa16.44■□□□□ 0.22
LIMS1-206ENST00000414829 LRRC8DQ7L1W4 858 aa16.44■□□□□ 0.22
LIMS1-206ENST00000414829 JPH2Q9BR39 696 aaPredicted RBP16.44■□□□□ 0.22
LIMS1-206ENST00000414829 ALPK3Q96L96 1907 aa16.43■□□□□ 0.22
LIMS1-206ENST00000414829 M0QZ92 97 aa16.43■□□□□ 0.22
LIMS1-206ENST00000414829 SPIRE1Q08AE8 756 aa16.43■□□□□ 0.22
LIMS1-206ENST00000414829 FAM43BQ6ZT52 329 aaPredicted RBP16.43■□□□□ 0.22
LIMS1-206ENST00000414829 GJA10Q969M2 543 aa16.43■□□□□ 0.22
LIMS1-206ENST00000414829 ZSWIM4Q9H7M6 989 aa16.43■□□□□ 0.22
LIMS1-206ENST00000414829 DNAH12Q6ZR08 3092 aa16.43■□□□□ 0.22
LIMS1-206ENST00000414829 TNRC18O15417 2968 aaPredicted RBP16.43■□□□□ 0.22
LIMS1-206ENST00000414829 TREHO43280 583 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 CKBP12277 381 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 TMOD1P28289 359 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 CYP2C18P33260 490 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 THPOP40225 353 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 FXR2P51116 673 aaKnown RBP eCLIP16.42■□□□□ 0.22
LIMS1-206ENST00000414829 IGBP1P78318 339 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 ARL6IP4Q66PJ3 421 aaKnown RBP16.42■□□□□ 0.22
LIMS1-206ENST00000414829 OTUD6AQ7L8S5 288 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 C4orf19Q8IY42 314 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 TDHQ8IZJ6 230 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 CCDC43Q96MW1 224 aaKnown RBP16.42■□□□□ 0.22
LIMS1-206ENST00000414829 CTAGE1Q96RT6 745 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 LXNQ9BS40 222 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 TMEM60Q9H2L4 133 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 IL23AQ9NPF7 189 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.42■□□□□ 0.22
LIMS1-206ENST00000414829 FOXD4L1Q9NU39 408 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 PCDHA2Q9Y5H9 948 aa16.42■□□□□ 0.22
LIMS1-206ENST00000414829 SMIM35A0A1B0GVV1 85 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 WNT7AO00755 349 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 IQCF3P0C7M6 154 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 ACTN1P12814 892 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 CSF2RAP15509 400 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 MUTP22033 750 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 ITGB8P26012 769 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 TOB1P50616 345 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-206ENST00000414829 ATP2C1P98194 919 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-206ENST00000414829 PTGDRQ13258 359 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 IER5Q5VY09 327 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 DTHD1Q6ZMT9 781 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 NME8Q8N427 588 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 PPP1R13LQ8WUF5 828 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 DHX38Q92620 1227 aaKnown RBP16.41■□□□□ 0.22
LIMS1-206ENST00000414829 MAP7D2Q96T17 732 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 WNT8AQ9H1J5 351 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 PRO3102Q9H379 93 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 TUFT1Q9NNX1 390 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 SEPT9Q9UHD8 586 aaPredicted RBP16.41■□□□□ 0.22
LIMS1-206ENST00000414829 MTMR6Q9Y217 621 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 PCDHB6Q9Y5E3 794 aa16.41■□□□□ 0.22
LIMS1-206ENST00000414829 RSPH10B2B2RC85 870 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 EML1O00423 815 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 GAS2O43903 313 aaKnown RBP16.4■□□□□ 0.22
LIMS1-206ENST00000414829 ZNF862O60290 1169 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 EFCAB14O75071 495 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 LYPLA2O95372 231 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 RSPH10BP0C881 870 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 CCL23P55773 120 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 ZNF200P98182 395 aaPredicted RBP16.4■□□□□ 0.22
LIMS1-206ENST00000414829 TBC1D8BQ0IIM8 1120 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 PDIA5Q14554 519 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 UGCGQ16739 394 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 TRIM71Q2Q1W2 868 aaKnown RBP16.4■□□□□ 0.22
LIMS1-206ENST00000414829 MTHFD1LQ6UB35 978 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 BANK1Q8NDB2 785 aa16.4■□□□□ 0.22
LIMS1-206ENST00000414829 EIF2AK1Q9BQI3 630 aaKnown RBP16.4■□□□□ 0.22
LIMS1-206ENST00000414829 NIFKQ9BYG3 293 aaKnown RBP16.4■□□□□ 0.22
LIMS1-206ENST00000414829 ATP4AP20648 1035 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 KLRC1P26715 233 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 RFC5P40937 340 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 TECP42680 631 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 DNM2P50570 870 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 CDC42EP1Q00587 391 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 RESTQ13127 1097 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 MARCH8Q5T0T0 291 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 FERMT3Q86UX7 667 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 KCTD17Q8N5Z5 321 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 USP38Q8NB14 1042 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 SLC7A3Q8WY07 619 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 AK8Q96MA6 479 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 COLQQ9Y215 455 aaPredicted RBP16.39■□□□□ 0.21
LIMS1-206ENST00000414829 UMODL1Q5DID0 1318 aa16.39■□□□□ 0.21
LIMS1-206ENST00000414829 POTEMA6NI47 508 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 DDX11L8A8MPP1 907 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 SLC26A4O43511 780 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 BAIAP3O94812 1187 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 C22orf31O95567 290 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 XRCC6P12956 609 aaKnown RBP eCLIP16.38■□□□□ 0.21
LIMS1-206ENST00000414829 YWHABP31946 246 aaKnown RBP16.38■□□□□ 0.21
LIMS1-206ENST00000414829 CYP4A11Q02928 519 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 HIC1Q14526 733 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 NBR1Q14596 966 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 FAM26DQ5JW98 314 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 ODR4Q5SWX8 454 aa16.38■□□□□ 0.21
LIMS1-206ENST00000414829 ZNF618Q5T7W0 954 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms