RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 SYDE2Q5VT97 1194 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 PAQR3Q6TCH7 311 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 KCTD1Q719H9 257 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 PAF1Q8N7H5 531 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 FLAD1Q8NFF5 587 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 FBXO41Q8TF61 875 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 TIFAQ96CG3 184 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 PEX11GQ96HA9 241 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.68□□□□□ -1.5
BRCA1-204ENST00000412061 CD244Q9BZW8 370 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 PCIF1Q9H4Z3 704 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 PTPRHQ9HD43 1115 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 H2AFY2Q9P0M6 372 aaPredicted RBP5.68□□□□□ -1.5
BRCA1-204ENST00000412061 MYOTQ9UBF9 498 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 USP25Q9UHP3 1055 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 PCDHB4Q9Y5E5 795 aa5.68□□□□□ -1.5
BRCA1-204ENST00000412061 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 SCDO00767 359 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 SLC27A2O14975 620 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 TBX3O15119 743 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 SGSM2O43147 1006 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 MPOP05164 745 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 CT47B1P0C2W7 299 aaPredicted RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 TRIM27P14373 513 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 GJA4P35212 333 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 GALK1P51570 392 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 KIF11P52732 1056 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 EPHA5P54756 1037 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 ERVFRD-1P60508 538 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 PICALMQ13492 652 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 NR1I3Q14994 352 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 INO80DQ53TQ3 878 aaPredicted RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 TPH2Q8IWU9 490 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 TRIM48Q8IWZ4 208 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 SPICE1Q8N0Z3 855 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 TMTC2Q8N394 836 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 KIAA1958Q8N8K9 716 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 SLC5A5Q92911 643 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 SENP7Q9BQF6 1050 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 RNF32Q9H0A6 362 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 TMX4Q9H1E5 349 aaPredicted RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 LUC7LQ9NQ29 371 aaKnown RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 CASS4Q9NQ75 786 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 ASH2LQ9UBL3 628 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 DBR1Q9UK59 544 aaKnown RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 FBXO9Q9UK97 447 aaPredicted RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 PALD1Q9ULE6 856 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 YBX2Q9Y2T7 364 aaKnown RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 SIT1Q9Y3P8 196 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 SPO11Q9Y5K1 396 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 B3GALT1Q9Y5Z6 326 aa5.67□□□□□ -1.5
BRCA1-204ENST00000412061 OAS3Q9Y6K5 1087 aaKnown RBP5.67□□□□□ -1.5
BRCA1-204ENST00000412061 ZC3H12DA2A288 527 aaKnown RBP5.66□□□□□ -1.5
BRCA1-204ENST00000412061 PRKD3O94806 890 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 FBXO21O94952 628 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 ZBTB7AO95365 584 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 SLC9A1P19634 815 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 SESN3P58005 492 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 SETQ01105 290 aaPredicted RBP5.66□□□□□ -1.5
BRCA1-204ENST00000412061 TUSC3Q13454 348 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 DDB1Q16531 1140 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 PTPN21Q16825 1174 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 CPZQ66K79 652 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 CXorf57Q6NSI4 855 aaKnown RBP5.66□□□□□ -1.5
BRCA1-204ENST00000412061 CC2D1AQ6P1N0 951 aaPredicted RBP5.66□□□□□ -1.5
BRCA1-204ENST00000412061 HDGFL2Q7Z4V5 671 aaPredicted RBP5.66□□□□□ -1.5
BRCA1-204ENST00000412061 MILR1Q7Z6M3 343 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 ABI1Q8IZP0 508 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 MYRIPQ8NFW9 859 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 PJA1Q8NG27 643 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 DLG3Q92796 817 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 KIRREL1Q96J84 757 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 PRDM11Q9NQV5 511 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 ACSS2Q9NR19 701 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 KCNH7Q9NS40 1196 aa5.66□□□□□ -1.5
BRCA1-204ENST00000412061 TCRBV5S2A0A599 114 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 F8W031 263 aaPredicted RBP5.65□□□□□ -1.51
BRCA1-204ENST00000412061 DVL2O14641 736 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 TGM5O43548 720 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 CYP17A1P05093 508 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 PTPN1P18031 435 aaKnown RBP5.65□□□□□ -1.51
BRCA1-204ENST00000412061 BDNFP23560 247 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 TXKP42681 527 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 IRAK1P51617 712 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 GP2P55259 537 aaKnown RBP5.65□□□□□ -1.51
BRCA1-204ENST00000412061 TMEM62Q0P6H9 643 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 SLC9A5Q14940 896 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 RGL3Q3MIN7 710 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 ADGRF1Q5T601 910 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 BTBD8Q5XKL5 378 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 FSTL4Q6MZW2 842 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 RBM12BQ8IXT5 1001 aaKnown RBP5.65□□□□□ -1.51
BRCA1-204ENST00000412061 INTS4Q96HW7 963 aaKnown RBP5.65□□□□□ -1.51
BRCA1-204ENST00000412061 ELF4Q99607 663 aaPredicted RBP5.65□□□□□ -1.51
BRCA1-204ENST00000412061 SARGQ9BW04 601 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 PDGFDQ9GZP0 370 aaPredicted RBP5.65□□□□□ -1.51
BRCA1-204ENST00000412061 SLC6A17Q9H1V8 727 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 RXFP1Q9HBX9 757 aa5.65□□□□□ -1.51
BRCA1-204ENST00000412061 TOMM22Q9NS69 142 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms