RNA–Protein interactions for RNA: ENST00000411767.6

PTPN13-202, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,119 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-202ENST00000411767 ADCY7P51828 1080 aa4.9□□□□□ -1.62
PTPN13-202ENST00000411767 FAM133BQ5BKY9 247 aaKnown RBP4.9□□□□□ -1.62
PTPN13-202ENST00000411767 HERC4Q5GLZ8 1057 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-202ENST00000411767 ALS2CLQ60I27 953 aa4.9□□□□□ -1.62
PTPN13-202ENST00000411767 POMGNT2Q8NAT1 580 aa4.9□□□□□ -1.62
PTPN13-202ENST00000411767 NEDD1Q8NHV4 660 aa4.9□□□□□ -1.62
PTPN13-202ENST00000411767 WDR36Q8NI36 951 aaKnown RBP4.9□□□□□ -1.62
PTPN13-202ENST00000411767 RMND5BQ96G75 393 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-202ENST00000411767 ZNF274Q96GC6 653 aaPredicted RBP4.9□□□□□ -1.62
PTPN13-202ENST00000411767 TCEANC2Q96MN5 208 aa4.9□□□□□ -1.62
PTPN13-202ENST00000411767 AIFM2Q9BRQ8 373 aa4.9□□□□□ -1.62
PTPN13-202ENST00000411767 C8orf4Q9NR00 106 aa4.9□□□□□ -1.62
PTPN13-202ENST00000411767 TRIM64A6NGJ6 449 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 RHPN2P1A8MT19 583 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 CLUP10909 449 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 PLCG1P19174 1290 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 MSH3P20585 1137 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 CDC27P30260 824 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 YWHAHQ04917 246 aaPredicted RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 CUL1Q13616 776 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 GUK1Q16774 197 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 HADHQ16836 314 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 INTS6LQ5JSJ4 861 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 SPOPLQ6IQ16 392 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 GRHL2Q6ISB3 625 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 DTHD1Q6ZMT9 781 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 TEX2Q8IWB9 1127 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 EFHBQ8N7U6 833 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 HIPK4Q8NE63 616 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 MPHOSPH9Q99550 1183 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 PRRG3Q9BZD7 231 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 REXO4Q9GZR2 422 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 RANBP17Q9H2T7 1088 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 PLEKHA4Q9H4M7 779 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 MRGBPQ9NV56 204 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 ANKIB1Q9P2G1 1089 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 UPB1Q9UBR1 384 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 DNALI1O14645 258 aaPredicted RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 CHMLP26374 656 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 CCT3P49368 545 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 PKD2Q13563 968 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 PHKG1Q16816 387 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 SPATA1Q5VX52 437 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 C1orf228Q6PIY5 440 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 SV2BQ7L1I2 683 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 JDP2Q8WYK2 163 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 SSH1Q8WYL5 1049 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 EFCAB1Q9HAE3 211 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 PIH1D3Q9NQM4 214 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 MAP3K20Q9NYL2 800 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 XPR1Q9UBH6 696 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 SEL1LQ9UBV2 794 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 UACAQ9BZF9 1416 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 SF3B1O75533 1304 aaKnown RBP eCLIP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 COPAP53621 1224 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 FASTKD1Q53R41 847 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 MCTP2Q6DN12 878 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 DCUN1D2Q6PH85 259 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 CIR1Q86X95 450 aaPredicted RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 KCNH5Q8NCM2 988 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 ICA1LQ8NDH6 482 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 DNAI1Q9UI46 699 aa4.9□□□□□ -1.63
PTPN13-202ENST00000411767 NSFL1CQ9UNZ2 370 aaKnown RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 BAZ1AQ9NRL2 1556 aaPredicted RBP4.9□□□□□ -1.63
PTPN13-202ENST00000411767 ARL5CA6NH57 179 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 ZNF839A8K0R7 811 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 ITIH2P19823 946 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 MAGEA6P43360 314 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 PSMD4P55036 377 aaKnown RBP4.89□□□□□ -1.63
PTPN13-202ENST00000411767 ADCY2Q08462 1091 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 ITKQ08881 620 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 POTEAQ6S8J7 498 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 SZRD1Q7Z422 152 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 SPATA5Q8NB90 893 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 PBXIP1Q96AQ6 731 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 TESCQ96BS2 214 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 FAM212AQ96EL1 285 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 KCNH8Q96L42 1107 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 GPR101Q96P66 508 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-202ENST00000411767 TMEM168Q9H0V1 697 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 TRPV6Q9H1D0 765 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 VPS11Q9H270 941 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 MAN1C1Q9NR34 630 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 WDR64B1ANS9 1081 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 TIPRLO75663 272 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 IL6P05231 212 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 AKR1D1P51857 326 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 KNOP1Q1ED39 458 aaKnown RBP4.89□□□□□ -1.63
PTPN13-202ENST00000411767 RRAGBQ5VZM2 374 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 LIN54Q6MZP7 749 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 OSBPL11Q9BXB4 747 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 SERHL2Q9H4I8 314 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 SERHLQ9NQF3 203 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 TUBA8Q9NY65 449 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-202ENST00000411767 ARMCX3Q9UH62 379 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-202ENST00000411767 SNX7Q9UNH6 387 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 IQSEC3Q9UPP2 1182 aaPredicted RBP4.89□□□□□ -1.63
PTPN13-202ENST00000411767 SENP3-EIF4A1A0A087X0R7 540 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 SULT1B1O43704 296 aa4.89□□□□□ -1.63
PTPN13-202ENST00000411767 DLGAP3O95886 979 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms