RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SNX11Q9Y5W9 270 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 MAP3K5Q99683 1374 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 TOGARAM1Q9Y4F4 1720 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 C5P01031 1676 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 C7orf72A4D263 438 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 RNMTO43148 476 aaKnown RBP8.13□□□□□ -1.11
USP40-202ENST00000409945 USP2O75604 605 aaPredicted RBP8.13□□□□□ -1.11
USP40-202ENST00000409945 LTBRP36941 435 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 NOP2P46087 812 aaKnown RBP8.13□□□□□ -1.11
USP40-202ENST00000409945 GUCY1A3Q02108 690 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 ZNF827Q17R98 1081 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 ACBD5Q5T8D3 534 aaPredicted RBP8.13□□□□□ -1.11
USP40-202ENST00000409945 TMPRSS7Q7RTY8 843 aa8.13□□□□□ -1.11
USP40-202ENST00000409945 NOP58Q9Y2X3 529 aaKnown RBP8.13□□□□□ -1.11
USP40-202ENST00000409945 SRCAPQ6ZRS2 3230 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 PAPPAQ13219 1627 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 hCG_2014768A0A024R1R8 64 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 PRKCQQ04759 706 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 IKZF1Q13422 519 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 TESK1Q15569 626 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 MAMDC2Q7Z304 686 aaPredicted RBP8.12□□□□□ -1.11
USP40-202ENST00000409945 DIO2Q92813 273 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 RNF112Q9ULX5 631 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 KDM6AO15550 1401 aaPredicted RBP8.12□□□□□ -1.11
USP40-202ENST00000409945 QSER1Q2KHR3 1735 aa8.12□□□□□ -1.11
USP40-202ENST00000409945 NOTOA8MTQ0 251 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 HTATSF1O43719 755 aaKnown RBP8.11□□□□□ -1.11
USP40-202ENST00000409945 OPA1O60313 960 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 HSP90B1P14625 803 aaKnown RBP8.11□□□□□ -1.11
USP40-202ENST00000409945 SSTR4P31391 388 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 KRT26Q7Z3Y9 468 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 KSR1Q8IVT5 923 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 LEO1Q8WVC0 666 aaPredicted RBP8.11□□□□□ -1.11
USP40-202ENST00000409945 DDX1Q92499 740 aaKnown RBP8.11□□□□□ -1.11
USP40-202ENST00000409945 GPR27Q9NS67 375 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 GULP1Q9UBP9 304 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 ADAMTS6Q9UKP5 1117 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 SCN11AQ9UI33 1791 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 SSU72P8A0A1W2PR75 194 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 SRGAP2CP0DJJ0 459 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 FPR2P25090 351 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 GALK1P51570 392 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 LBX2Q6XYB7 198 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 PNPLA7Q6ZV29 1317 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 PCDH19Q8TAB3 1148 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 ASB11Q8WXH4 323 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 JMJD8Q96S16 334 aa8.11□□□□□ -1.11
USP40-202ENST00000409945 TEX13AQ9BXU3 409 aaPredicted RBP8.11□□□□□ -1.11
USP40-202ENST00000409945 MAGEC2Q9UBF1 373 aaPredicted RBP8.11□□□□□ -1.11
USP40-202ENST00000409945 CASZ1Q86V15 1759 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 C4BP0C0L5 1744 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 RAB11FIP3O75154 756 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 GLRX3O76003 335 aaKnown RBP8.1□□□□□ -1.11
USP40-202ENST00000409945 ZGLP1P0C6A0 271 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 PAMP19021 973 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 CNGA1P29973 690 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 LMOD3Q0VAK6 560 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 TIGD5Q53EQ6 642 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 MTDHQ86UE4 582 aaKnown RBP8.1□□□□□ -1.11
USP40-202ENST00000409945 ANKRD13AQ8IZ07 590 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 AFAP1L2Q8N4X5 818 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 LINC01599Q8WXQ3 324 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 INTS7Q9NVH2 962 aaKnown RBP8.1□□□□□ -1.11
USP40-202ENST00000409945 C19orf73Q9NVV2 129 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 SLAMF8Q9P0V8 285 aa8.1□□□□□ -1.11
USP40-202ENST00000409945 ARVCFO00192 962 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 ANP32CO43423 234 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 STARD3NLO95772 234 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 CKMP06732 381 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 MSL3P1P0C860 447 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 RFC4P35249 363 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 BCL6P41182 706 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 CD97P48960 835 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 ERVFC1P60507 584 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 FSTL4Q6MZW2 842 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 TEX2Q8IWB9 1127 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 NAT16Q8N8M0 369 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 PRPF38AQ8NAV1 312 aaKnown RBP8.09□□□□□ -1.11
USP40-202ENST00000409945 FCRL2Q96LA5 508 aaPredicted RBP8.09□□□□□ -1.11
USP40-202ENST00000409945 MAGEB10Q96LZ2 347 aaPredicted RBP8.09□□□□□ -1.11
USP40-202ENST00000409945 MMP19Q99542 508 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 PLCD4Q9BRC7 762 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 CCDC39Q9UFE4 941 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 VAV3Q9UKW4 847 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 TAF1LQ8IZX4 1826 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 ZNF831Q5JPB2 1677 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 BTBD11A6QL63 1104 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 ZNF891A8MT65 544 aaPredicted RBP8.09□□□□□ -1.11
USP40-202ENST00000409945 GPR85P60893 370 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 ZP2Q05996 745 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 E4F1Q66K89 784 aaPredicted RBP8.09□□□□□ -1.11
USP40-202ENST00000409945 DDX42Q86XP3 938 aaKnown RBP eCLIP8.09□□□□□ -1.11
USP40-202ENST00000409945 COL23A1Q86Y22 540 aaPredicted RBP8.09□□□□□ -1.11
USP40-202ENST00000409945 IGSF22Q8N9C0 903 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 PNISRQ8TF01 805 aaKnown RBP8.09□□□□□ -1.11
USP40-202ENST00000409945 CHAC2Q8WUX2 184 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 MAP6Q96JE9 813 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 FMNL2Q96PY5 1086 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 JAM3Q9BX67 310 aa8.09□□□□□ -1.11
USP40-202ENST00000409945 PRKRIP1Q9H875 184 aaPredicted RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms