RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CYP26B1Q9NR63 512 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 ZFATQ9P243 1243 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 AREL1O15033 823 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 OR52Z1P0C646 297 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 CASP2P42575 452 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 DEPDC1BQ8WUY9 529 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 EPC1Q9H2F5 836 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 KAT6AQ92794 2004 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 SMAPO00193 183 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 KPNA4O00629 521 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-206ENST00000409809 FAM212AQ96EL1 285 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 KLHL2O95198 593 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 POLR2FP61218 127 aaKnown RBP13.79□□□□□ -0.2
COL6A3-206ENST00000409809 BEGAINQ9BUH8 593 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 IL1RL1Q01638 556 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 ATP8A2Q9NTI2 1148 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 PANK4Q9NVE7 773 aa13.79□□□□□ -0.2
COL6A3-206ENST00000409809 WDR7Q9Y4E6 1490 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 AFPP02771 609 aaKnown RBP13.78□□□□□ -0.2
COL6A3-206ENST00000409809 PPP6R3Q5H9R7 873 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-206ENST00000409809 BIN2Q9UBW5 565 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-206ENST00000409809 ASAP2O43150 1006 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 FAM167BQ9BTA0 163 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 SNX25Q9H3E2 840 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 MTO1Q9Y2Z2 717 aaKnown RBP13.78□□□□□ -0.2
COL6A3-206ENST00000409809 PPME1Q9Y570 386 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 RASGRF1Q13972 1273 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 STAT4Q14765 748 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 ADCK5Q3MIX3 580 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 EXOC8Q8IYI6 725 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 RMDN1Q96DB5 314 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 SIKE1Q9BRV8 207 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 DYTNA2CJ06 578 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 SAC3D1A6NKF1 404 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 AP3B1O00203 1094 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 PPP2R5CQ13362 524 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 ADAM9Q13443 819 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.78□□□□□ -0.2
COL6A3-206ENST00000409809 UVRAGQ9P2Y5 699 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 DEPDC1Q5TB30 811 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 CCDC103Q8IW40 242 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 TEKT4Q8WW24 435 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 CARD9Q9H257 536 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 NFKBIAP25963 317 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 ARL6IP4Q66PJ3 421 aaKnown RBP13.78□□□□□ -0.2
COL6A3-206ENST00000409809 IKBIPQ70UQ0 350 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 GPBP1Q86WP2 473 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 P2RX5Q93086 422 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 NACA2Q9H009 215 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 NEUROG2Q9H2A3 272 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 SERTAD1Q9UHV2 236 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 STX7O15400 261 aaKnown RBP13.78□□□□□ -0.2
COL6A3-206ENST00000409809 TNNI1P19237 187 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 ZCWPW2Q504Y3 356 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 BRDTQ58F21 947 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-206ENST00000409809 TESK2Q96S53 571 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 KLHL31Q9H511 634 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 RCOR1Q9UKL0 485 aa13.78□□□□□ -0.2
COL6A3-206ENST00000409809 O00370 1275 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 CAPN1P07384 714 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 MYL7Q01449 175 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 WLSQ5T9L3 541 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 PLEKHM3Q6ZWE6 761 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 SIX6OS1Q8N1H7 587 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 ATP11CQ8NB49 1132 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 MAGED4Q96JG8 741 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 LSP1P33241 339 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 CYP4F22Q6NT55 531 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 DCLRE1BQ9H816 532 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 BTBD7Q9P203 1132 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 DNAJC12Q9UKB3 198 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 ANKRD12Q6UB98 2062 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 CCT8L1PA6NM43 557 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 COPS2P61201 443 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 ORC2Q13416 577 aaPredicted RBP13.77□□□□□ -0.2
COL6A3-206ENST00000409809 KLHL12Q53G59 568 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 TMC5Q6UXY8 1006 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 B4GALNT2Q8NHY0 566 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 OLFML3Q9NRN5 406 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 PHF8Q9UPP1 1060 aa13.77□□□□□ -0.2
COL6A3-206ENST00000409809 GPAA1O43292 621 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 CDH16O75309 829 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 LDHBP07195 334 aaKnown RBP13.77□□□□□ -0.21
COL6A3-206ENST00000409809 DCTN2Q13561 401 aaKnown RBP13.77□□□□□ -0.21
COL6A3-206ENST00000409809 TP53BP2Q13625 1128 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 SPOPLQ6IQ16 392 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 LRRC8EQ6NSJ5 796 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 CD19P15391 556 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 PCNX4Q63HM2 1172 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 WDR62O43379 1518 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 ENC1O14682 589 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 BSPRYQ5W0U4 402 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 EME1Q96AY2 570 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 USP28Q96RU2 1077 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 FBXO2Q9UK22 296 aaPredicted RBP13.77□□□□□ -0.21
COL6A3-206ENST00000409809 FAM178BQ8IXR5 827 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 WDR70Q9NW82 654 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 HESX1Q9UBX0 185 aa13.77□□□□□ -0.21
COL6A3-206ENST00000409809 TOMM70O94826 608 aa13.76□□□□□ -0.21
COL6A3-206ENST00000409809 ATP5JP18859 108 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms