RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ADD2P35612 726 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 IRX5P78411 483 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 GRIN1Q05586 938 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 SCRN1Q12765 414 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ABCB5Q2M3G0 1257 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 TCP11X2Q5H9J9 407 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 EFL1Q7Z2Z2 1120 aaKnown RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 MAPKAPK5Q8IW41 473 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ASPSCR1Q9BZE9 553 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 C2orf40Q9H1Z8 148 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 PSD3Q9NYI0 1048 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 BLOC1S6Q9UL45 172 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 A2ML1A8K2U0 1454 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 RIMBP2O15034 1052 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 NEK2P51955 445 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 RESTQ13127 1097 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 SUPT20HL1Q3ZLR7 823 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 DNAL1Q4LDG9 190 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 RESP18Q5W5W9 173 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 DARS2Q6PI48 645 aaKnown RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 TOGARAM2Q6ZUX3 1019 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 CDKL3Q8IVW4 592 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 PITPNM3Q9BZ71 974 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 MYO3BQ8WXR4 1341 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 TMEM2Q9UHN6 1383 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 A0A0D9SFI3 127 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 COPEO14579 308 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ZBED1O96006 694 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 PHKG2P15735 406 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 SFNP31947 248 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 HSPA13P48723 471 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 KCTD2Q14681 263 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 EAF2Q96CJ1 260 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 GPBP1L1Q9HC44 474 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ZC4H2Q9NQZ6 224 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 PNMA6FA0A0J9YX94 578 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 POC1B-GALNT4F8VUJ3 575 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 DEAF1O75398 565 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 MMEP08473 750 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 PLTPP55058 493 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 IRX1P78414 480 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 KRR1Q13601 381 aaKnown RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 TERF2Q15554 542 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 RARS2Q5T160 578 aaKnown RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 GRAMD4Q6IC98 578 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 AGGF1Q8N302 714 aaeCLIP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 KRT35Q92764 455 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 DESI2Q9BSY9 194 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 LRRC4Q9HBW1 653 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 SUCLA2Q9P2R7 463 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ANKARQ7Z5J8 1434 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 CFAP69A5D8W1 941 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 GMNCA6NCL1 334 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 PNMA6AP0CW24 399 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 CLCN6P51797 869 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 SP4Q02446 784 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 TMED2Q15363 201 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 HIBCHQ6NVY1 386 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ALKBH5Q6P6C2 394 aaKnown RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 POTEAQ6S8J7 498 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 MTHFD1LQ6UB35 978 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 MIGA2Q7L4E1 593 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 TERB1Q8NA31 727 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 OTUB1Q96FW1 271 aaPredicted RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ACAP3Q96P50 834 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 MMS19Q96T76 1030 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 ZNF577Q9BSK1 485 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 WWP1Q9H0M0 922 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 SLC39A2Q9NP94 309 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 TBC1D22BQ9NU19 505 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 TPX2Q9ULW0 747 aaKnown RBP6.54□□□□□ -1.36
SCN1A-203ENST00000409050 KIAA1024Q9UPX6 916 aa6.54□□□□□ -1.36
SCN1A-203ENST00000409050 RSPH10B2B2RC85 870 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 MAP3K13O43283 966 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 HAUS5O94927 633 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 RSPH10BP0C881 870 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 PSMA3P25788 255 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 SERPINB9P50453 376 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 GPC5P78333 572 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 KCNB1Q14721 858 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 DEPDC1BQ8WUY9 529 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 FRMD8P1Q9BZ68 369 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 GCNT4Q9P109 453 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 ATP8A1Q9Y2Q0 1164 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 IGSF1Q8N6C5 1336 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 GYG2O15488 501 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 TADA3O75528 432 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 AGTP01019 485 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 PPP2R2AP63151 447 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 KCTD6Q8NC69 237 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 KLHDC4Q8TBB5 520 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 OTUD7AQ8TE49 926 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 EML4Q9HC35 981 aaKnown RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 SCHIP1Q9P0W5 487 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 ITIH6Q6UXX5 1313 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 HSPA4LO95757 839 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 EIF4A3P38919 411 aaKnown RBP6.53□□□□□ -1.36
SCN1A-203ENST00000409050 BTDP43251 543 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 AP1B1Q10567 949 aa6.53□□□□□ -1.36
SCN1A-203ENST00000409050 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms