RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 KCNV1Q6PIU1 500 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 PPP4R3CPQ6ZMV5 832 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 RHPN2Q8IUC4 686 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 LRRC8AQ8IWT6 810 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 KDM3BQ7LBC6 1761 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 A0A1W2PRG0 241 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 NR3C1P04150 777 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 SREBF1P36956 1147 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 TCP11X2Q5H9J9 407 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 GUF1Q8N442 669 aaKnown RBP9.93□□□□□ -0.82
LIG4-202ENST00000405925 SCFD2Q8WU76 684 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 GCNT4Q9P109 453 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 NUB1Q9Y5A7 615 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 MYMKA6NI61 221 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 YWHAEP62258 255 aaKnown RBP9.93□□□□□ -0.82
LIG4-202ENST00000405925 XKR3Q5GH77 459 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 PLA2G4FQ68DD2 849 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 OR6J1Q8NGC5 347 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 RAET1EQ8TD07 263 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 SPATC1LQ9H0A9 340 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 POLR3FQ9H1D9 316 aaPredicted RBP9.93□□□□□ -0.82
LIG4-202ENST00000405925 SEL1LQ9UBV2 794 aa9.93□□□□□ -0.82
LIG4-202ENST00000405925 ZNF233A6NK53 670 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 VWA5AO00534 786 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 C6orf222P0C671 652 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 MCM3P25205 808 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 RPA1P27694 616 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 NMT1P30419 496 aaKnown RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 DSG3P32926 999 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 KNOP1Q1ED39 458 aaKnown RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 SYTL5Q8TDW5 730 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 CACTINQ8WUQ7 758 aaKnown RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 MKL1Q969V6 931 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 NXF1Q9UBU9 619 aaKnown RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 ASTN2O75129 1339 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 IRF6O14896 467 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 CLDN3O15551 220 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 ARP10275 920 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 ABCD1P33897 745 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 FXR2P51116 673 aaKnown RBP eCLIP9.92□□□□□ -0.82
LIG4-202ENST00000405925 NPEPPSP55786 919 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 GABPAQ06546 454 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 RBL2Q08999 1139 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 SLC30A10Q6XR72 485 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 HOOK3Q86VS8 718 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 ZNF354CQ86Y25 554 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 XXYLT1Q8NBI6 393 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 P2RX7Q99572 595 aaKnown RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 NAPGQ99747 312 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 CPA4Q9UI42 421 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 USTQ9Y2C2 406 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 EPN1Q9Y6I3 576 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 MAFGO15525 162 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 HOXA7P31268 230 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 SREBF2Q12772 1141 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 HAUS6Q7Z4H7 955 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 TAX1BP1Q86VP1 789 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 NUDT12Q9BQG2 462 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 PDCD2LQ9BRP1 358 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 GCLCP48506 637 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 LACTBP83111 547 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 STK4Q13043 487 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 XRRA1Q6P2D8 792 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 ABI1Q8IZP0 508 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 CEP112Q8N8E3 955 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 FAM193BQ96PV7 902 aaPredicted RBP9.92□□□□□ -0.82
LIG4-202ENST00000405925 REEP2Q9BRK0 252 aa9.92□□□□□ -0.82
LIG4-202ENST00000405925 CYP2C8P10632 490 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 ZSCAN20P17040 1043 aaPredicted RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 PDE6CP51160 858 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 PRKCEQ02156 737 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 PPATQ06203 517 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 IFFO1Q0D2I5 559 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 KCNB1Q14721 858 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 SEPT7Q16181 437 aaKnown RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 PTPROQ16827 1216 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 NAALADL2Q58DX5 795 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 ZNF771Q7L3S4 317 aaPredicted RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 VSTM4Q8IW00 320 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 C7orf31Q8N865 590 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 CYP2W1Q8TAV3 490 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 ANKRD36BP1Q96IX9 119 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 FERMT1Q9BQL6 677 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 ASCC2Q9H1I8 757 aaPredicted RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 TYW1Q9NV66 732 aaKnown RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 TLR3O15455 904 aaKnown RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 XPOTO43592 962 aaKnown RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 ACTN4O43707 911 aaKnown RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 DGAT1O75907 488 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 GNAT1P11488 350 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 PHKA2P46019 1235 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 ZNF568Q3ZCX4 644 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 SLFN12LQ6IEE8 588 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 TATDN1Q6P1N9 297 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 CATSPER3Q86XQ3 398 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 RNF149Q8NC42 400 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 ENGASEQ8NFI3 743 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 TMEM143Q96AN5 459 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 CCDC94Q9BW85 323 aaPredicted RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms