RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 STAM2O75886 525 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 CD4P01730 458 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 HSP90AA1P07900 732 aaKnown RBP10.45□□□□□ -0.74
VPS53-203ENST00000401468 MYOGP15173 224 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 CYP3A7P24462 503 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 USP11P51784 963 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 RABGGTBP53611 331 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 NR5A1Q13285 461 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 PGM5Q15124 567 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 DUSP28Q4G0W2 176 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 EARS2Q5JPH6 523 aaKnown RBP10.45□□□□□ -0.74
VPS53-203ENST00000401468 TMEM240Q5SV17 173 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 MOXD1Q6UVY6 613 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 OTOP2Q7RTS6 562 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 KRT25Q7Z3Z0 450 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 FCHSD1Q86WN1 690 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 NOSTRINQ8IVI9 506 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 RASGRP4Q8TDF6 673 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 PPM1EQ8WY54 764 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 MBOAT7Q96N66 472 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 IPO9Q96P70 1041 aaKnown RBP10.45□□□□□ -0.74
VPS53-203ENST00000401468 RMDN3Q96TC7 470 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 SEMA6BQ9H3T3 888 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 HIPK3Q9H422 1215 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 BCAS3Q9H6U6 928 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 BRMS1Q9HCU9 246 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 TMEM260Q9NX78 707 aa10.45□□□□□ -0.74
VPS53-203ENST00000401468 PRRC2BQ5JSZ5 2229 aaKnown RBP10.45□□□□□ -0.74
VPS53-203ENST00000401468 KIAA1671Q9BY89 1806 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 LCE2BO14633 110 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 TLR3O15455 904 aaKnown RBP10.44□□□□□ -0.74
VPS53-203ENST00000401468 BRD1O95696 1058 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 ZNF286BP0CG31 522 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 MRPS9P82933 396 aaKnown RBP10.44□□□□□ -0.74
VPS53-203ENST00000401468 ARHGAP4P98171 946 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 PURAQ00577 322 aaKnown RBP10.44□□□□□ -0.74
VPS53-203ENST00000401468 GUCY1B3Q02153 619 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 RESTQ13127 1097 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 NONOQ15233 471 aaKnown RBP eCLIP10.44□□□□□ -0.74
VPS53-203ENST00000401468 SAFBQ15424 915 aaKnown RBP eCLIP10.44□□□□□ -0.74
VPS53-203ENST00000401468 NBPF20Q3BBV1 942 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 ARHGEF16Q5VV41 709 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 MFSD5Q6N075 450 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 NIPA1Q7RTP0 329 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 AFG1LQ8WV93 481 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 TOX2Q96NM4 488 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 INPP4AQ96PE3 977 aaPredicted RBP10.44□□□□□ -0.74
VPS53-203ENST00000401468 SPSB2Q99619 263 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 NOC4LQ9BVI4 516 aaKnown RBP10.44□□□□□ -0.74
VPS53-203ENST00000401468 EHMT1Q9H9B1 1298 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 ZDHHC9Q9Y397 364 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 TELO2Q9Y4R8 837 aa10.44□□□□□ -0.74
VPS53-203ENST00000401468 MROH7Q68CQ1 1323 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 IGLV3-22A0A075B6J6 115 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 RBM47A0AV96 593 aaKnown RBP10.43□□□□□ -0.74
VPS53-203ENST00000401468 ZBBXA8MT70 800 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 B4DLN1 442 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 H3BQV1 296 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 NR3C2P08235 984 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 ZSCAN22P10073 491 aaPredicted RBP10.43□□□□□ -0.74
VPS53-203ENST00000401468 TRAPPC10P48553 1259 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 ORC2Q13416 577 aaPredicted RBP10.43□□□□□ -0.74
VPS53-203ENST00000401468 PKP1Q13835 747 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 GRIN2CQ14957 1233 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 STXBP2Q15833 593 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 JAKMIP3Q5VZ66 844 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 PPP4R3AQ6IN85 833 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 BRAPQ7Z569 592 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 TMCO2Q7Z6W1 182 aaPredicted RBP10.43□□□□□ -0.74
VPS53-203ENST00000401468 TBCKQ8TEA7 893 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 EMID1Q96A84 441 aaPredicted RBP10.43□□□□□ -0.74
VPS53-203ENST00000401468 LENG9Q96B70 501 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 VWCEQ96DN2 955 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 SNX27Q96L92 541 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 ZSCAN16Q9H4T2 348 aaPredicted RBP10.43□□□□□ -0.74
VPS53-203ENST00000401468 UBIAD1Q9Y5Z9 338 aa10.43□□□□□ -0.74
VPS53-203ENST00000401468 MEIS1O00470 390 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 ZEB2O60315 1214 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 EIF3JO75822 258 aaKnown RBP10.42□□□□□ -0.74
VPS53-203ENST00000401468 CCND2P30279 289 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 ICAM3P32942 547 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 TOB1P50616 345 aaPredicted RBP10.42□□□□□ -0.74
VPS53-203ENST00000401468 ZNF200P98182 395 aaPredicted RBP10.42□□□□□ -0.74
VPS53-203ENST00000401468 ARHGAP1Q07960 439 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 PPIGQ13427 754 aaKnown RBP eCLIP10.42□□□□□ -0.745e-7■■□□□ 12.4
VPS53-203ENST00000401468 TTLL4Q14679 1199 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 Q4G0T1 1027 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 PIK3AP1Q6ZUJ8 805 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 NEK8Q86SG6 692 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 TMEM199Q8N511 208 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 USP38Q8NB14 1042 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 SLC43A3Q8NBI5 491 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 SCFD2Q8WU76 684 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 PGBD1Q96JS3 809 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 MPHOSPH6Q99547 160 aaKnown RBP10.42□□□□□ -0.74
VPS53-203ENST00000401468 MTG1Q9BT17 334 aaPredicted RBP10.42□□□□□ -0.74
VPS53-203ENST00000401468 PBX4Q9BYU1 374 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 NKX2-4Q9H2Z4 354 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 CERS4Q9HA82 394 aa10.42□□□□□ -0.74
VPS53-203ENST00000401468 MORC2Q9Y6X9 1032 aaPredicted RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms