RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 AP1M1Q9BXS5 423 aa22.59■■□□□ 1.21
CLK3-202ENST00000395066 HOXA13P31271 388 aaPredicted RBP22.58■■□□□ 1.21
CLK3-202ENST00000395066 FOXR2Q6PJQ5 311 aa22.58■■□□□ 1.21
CLK3-202ENST00000395066 PIK3R5Q8WYR1 880 aa22.58■■□□□ 1.21
CLK3-202ENST00000395066 ZC3H12CQ9C0D7 883 aaKnown RBP22.58■■□□□ 1.21
CLK3-202ENST00000395066 LUC7LQ9NQ29 371 aaKnown RBP22.58■■□□□ 1.21
CLK3-202ENST00000395066 ARMCX3Q9UH62 379 aaPredicted RBP22.58■■□□□ 1.21
CLK3-202ENST00000395066 NDUFAB1O14561 156 aa22.58■■□□□ 1.2
CLK3-202ENST00000395066 HLA-DOAP06340 250 aa22.58■■□□□ 1.2
CLK3-202ENST00000395066 SLFN13Q68D06 897 aa22.58■■□□□ 1.2
CLK3-202ENST00000395066 DDX42Q86XP3 938 aaKnown RBP eCLIP22.58■■□□□ 1.2
CLK3-202ENST00000395066 ETNPPLQ8TBG4 499 aa22.58■■□□□ 1.2
CLK3-202ENST00000395066 LY75O60449 1722 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 FRMD3A2A2Y4 597 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 DDTLA6NHG4 134 aaPredicted RBP22.57■■□□□ 1.2
CLK3-202ENST00000395066 PON1P27169 355 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 CFAP58Q5T655 872 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 GDF11O95390 407 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 IKQ13123 557 aaPredicted RBP22.57■■□□□ 1.2
CLK3-202ENST00000395066 USP38Q8NB14 1042 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 RUSC1Q9BVN2 902 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 COA1Q9GZY4 146 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 BHMT2Q9H2M3 363 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 RGL1Q9NZL6 768 aa22.57■■□□□ 1.2
CLK3-202ENST00000395066 ZEB2O60315 1214 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 HOXA10P31260 410 aaPredicted RBP22.56■■□□□ 1.2
CLK3-202ENST00000395066 EXOC3L4Q17RC7 722 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 KNOP1Q1ED39 458 aaKnown RBP22.56■■□□□ 1.2
CLK3-202ENST00000395066 MCTP2Q6DN12 878 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 B4GALNT4Q76KP1 1039 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 KIAA0825Q8IV33 1275 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 LENG9Q96B70 501 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 CEP104O60308 925 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 PAK2Q13177 524 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 EDRF1Q3B7T1 1238 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 KSR1Q8IVT5 923 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 ZC3H3Q8IXZ2 948 aaKnown RBP22.56■■□□□ 1.2
CLK3-202ENST00000395066 IQCKQ8N0W5 287 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 DBNDD1Q9H9R9 158 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 PCDHB13Q9Y5F0 798 aa22.56■■□□□ 1.2
CLK3-202ENST00000395066 POLRMTO00411 1230 aaKnown RBP22.55■■□□□ 1.2
CLK3-202ENST00000395066 AFPP02771 609 aaKnown RBP22.55■■□□□ 1.2
CLK3-202ENST00000395066 USP11P51784 963 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 RPS6KA1Q15418 735 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 FBXW10Q5XX13 1052 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 SIAH1Q8IUQ4 282 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 RNF14Q9UBS8 474 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 NAGPAQ9UK23 515 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 DNM3Q9UQ16 869 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 ZBTB39O15060 712 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 GCNT3O95395 438 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 XRCC5P13010 732 aaKnown RBP22.55■■□□□ 1.2
CLK3-202ENST00000395066 HLTFQ14527 1009 aaKnown RBP eCLIP22.55■■□□□ 1.2
CLK3-202ENST00000395066 PIGOQ8TEQ8 1089 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 TEKT1Q969V4 418 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 SMCHD1A6NHR9 2005 aa22.55■■□□□ 1.2
CLK3-202ENST00000395066 ERVK-9P63128 1117 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 GUCY1A3Q02108 690 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 ALKBH5Q6P6C2 394 aaKnown RBP22.54■■□□□ 1.2
CLK3-202ENST00000395066 ARHGAP27Q6ZUM4 889 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 TAF4BQ92750 862 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 RNPC3Q96LT9 517 aaKnown RBP22.54■■□□□ 1.2
CLK3-202ENST00000395066 CRAMP1Q96RY5 1269 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 ATXN2Q99700 1313 aaKnown RBP22.54■■□□□ 1.2
CLK3-202ENST00000395066 ASTN1O14525 1302 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 TMCO5BA8MYB1 307 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 EML1O00423 815 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 KIF4AO95239 1232 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 KDM7AQ6ZMT4 941 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 SLFN12Q8IYM2 578 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 OR2W6PQ8NHA6 318 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 CENPHQ9H3R5 247 aa22.54■■□□□ 1.2
CLK3-202ENST00000395066 PITPNM2Q9BZ72 1349 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 CYP3A7-CYP3A51PA0A087WV96 503 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 CYP3A7P24462 503 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 HNRNPH1P31943 449 aaKnown RBP22.53■■□□□ 1.2
CLK3-202ENST00000395066 RBM5P52756 815 aaKnown RBP eCLIP22.53■■□□□ 1.2
CLK3-202ENST00000395066 CERKLQ49MI3 558 aaPredicted RBP22.53■■□□□ 1.2
CLK3-202ENST00000395066 SWT1Q5T5J6 900 aaKnown RBP22.53■■□□□ 1.2
CLK3-202ENST00000395066 SP8Q8IXZ3 490 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 SYT2Q8N9I0 419 aaPredicted RBP22.53■■□□□ 1.2
CLK3-202ENST00000395066 CRYGNQ8WXF5 182 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 CEP89Q96ST8 783 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 DDX47Q9H0S4 455 aaKnown RBP22.53■■□□□ 1.2
CLK3-202ENST00000395066 G3V3G9 751 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 NR3C1P04150 777 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 CRKP46108 304 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 DCAF8Q5TAQ9 597 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 EPM2AIP1Q7L775 607 aaPredicted RBP22.53■■□□□ 1.2
CLK3-202ENST00000395066 SPICE1Q8N0Z3 855 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 SIX2Q9NPC8 291 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 GCNT4Q9P109 453 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 TRAF3IP3Q9Y228 551 aa22.53■■□□□ 1.2
CLK3-202ENST00000395066 MSH4O15457 936 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 ITGA4P13612 1032 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 EPHA7Q15375 998 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 SH3BP5LQ7L8J4 393 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 MAATS1Q7Z4T9 603 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 MBOAT7Q96N66 472 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 NEUROG2Q9H2A3 272 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms