RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 SLITRK3O94933 977 aa13.16□□□□□ -0.3
DEPDC4-202ENST00000378244 QARSP47897 775 aaKnown RBP13.16□□□□□ -0.3
DEPDC4-202ENST00000378244 EPHA7Q15375 998 aa13.16□□□□□ -0.3
DEPDC4-202ENST00000378244 SPECC1Q5M775 1068 aa13.16□□□□□ -0.3
DEPDC4-202ENST00000378244 C1orf53Q5VUE5 145 aa13.16□□□□□ -0.3
DEPDC4-202ENST00000378244 ANKRD33Q7Z3H0 272 aa13.16□□□□□ -0.3
DEPDC4-202ENST00000378244 AFAP1L1Q8TED9 768 aa13.16□□□□□ -0.3
DEPDC4-202ENST00000378244 CEP131Q9UPN4 1083 aa13.16□□□□□ -0.3
DEPDC4-202ENST00000378244 SCN10AQ9Y5Y9 1956 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 P4HBP07237 508 aaKnown RBP13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 CLTBP09497 229 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 PSMC5P62195 406 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 STK38Q15208 465 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 PTPAQ15257 358 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 GRIK4Q16099 956 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 ATP8B4Q8TF62 1192 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 ZNF396Q96N95 335 aaPredicted RBP13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 PRKAG2Q9UGJ0 569 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 SEPT9Q9UHD8 586 aaPredicted RBP13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 MROH7Q68CQ1 1323 aa13.15□□□□□ -0.3
DEPDC4-202ENST00000378244 DDX11L8A8MPP1 907 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 SLC26A2P50443 739 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 FXR2P51116 673 aaKnown RBP eCLIP13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 PLA2G4FQ68DD2 849 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 CATSPER3Q86XQ3 398 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 RDM1Q8NG50 284 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 PIGOQ8TEQ8 1089 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 CLIC6Q96NY7 704 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 PLIN2Q99541 437 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 HSD17B14Q9BPX1 270 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 BMP2KQ9NSY1 1161 aaPredicted RBP13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 IGSF9BQ9UPX0 1349 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 NRCAMQ92823 1304 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 TLR3O15455 904 aaKnown RBP13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 MED24O75448 989 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 OATP04181 439 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 ITGB8P26012 769 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 PRPHP41219 470 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 NPEPPSP55786 919 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 MTERF2Q49AM1 385 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 IGSF22Q8N9C0 903 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 TOX2Q96NM4 488 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 CTAGE1Q96RT6 745 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 RAB34Q9BZG1 259 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 PDLIM7Q9NR12 457 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 TUBE1Q9UJT0 475 aa13.14□□□□□ -0.31
DEPDC4-202ENST00000378244 UMODL1Q5DID0 1318 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 TRIM43BA6NCK2 446 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 CD4P01730 458 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 DDIT3P35638 169 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 CCT6AP40227 531 aaKnown RBP13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 MARCH8Q5T0T0 291 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 POTEGQ6S5H5 508 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 ANO5Q75V66 913 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 SNX29Q8TEQ0 813 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 BBXQ8WY36 941 aaPredicted RBP13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 WNT8BQ93098 351 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 TRIM43Q96BQ3 446 aaPredicted RBP13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 FAM49AQ9H0Q0 323 aaPredicted RBP13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 ZSWIM4Q9H7M6 989 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 NR2E3Q9Y5X4 410 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 HBP1O60381 514 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 BMP15O95972 392 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 SPATA31C1P0DKV0 1188 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 RAG1P15918 1043 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 YWHABP31946 246 aaKnown RBP13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 CYP2C18P33260 490 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 NUCB2P80303 420 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 PDIA5Q14554 519 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 SLC39A14Q15043 492 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 ARL6IP4Q66PJ3 421 aaKnown RBP13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 METTL13Q8N6R0 699 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 ZNF579Q8NAF0 562 aaKnown RBP13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 LINC00301Q8NCQ3 95 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 ERMNQ8TAM6 284 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 HIPK3Q9H422 1215 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 NRBP2Q9NSY0 501 aa13.13□□□□□ -0.31
DEPDC4-202ENST00000378244 GNAT1P11488 350 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 KLRC1P26715 233 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 CCL23P55773 120 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 ECM1Q16610 540 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 XKR3Q5GH77 459 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 KRT79Q5XKE5 535 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 USP49Q70CQ1 688 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 SESTD1Q86VW0 696 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 TNPO1Q92973 898 aaKnown RBP13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 CSRNP2Q9H175 543 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 SUGCTQ9HAC7 445 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 GDPD2Q9HCC8 539 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 ZBTB42B2RXF5 422 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 H0YGN5 161 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 SPTLC2O15270 562 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 CTSHP09668 335 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 NASPP49321 788 aaPredicted RBP13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 MDM2Q00987 491 aaPredicted RBP13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 PTPN11Q06124 597 aaPredicted RBP13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 TMEM62Q0P6H9 643 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 RUFY4Q6ZNE9 571 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 RASSF8Q8NHQ8 419 aa13.12□□□□□ -0.31
DEPDC4-202ENST00000378244 EPSTI1Q96J88 318 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms