RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 KCNH2Q12809 1159 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 ZNF211Q13398 564 aaPredicted RBP17.28■□□□□ 0.36
CKAP4-201ENST00000378026 BIRC2Q13490 618 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 ECM1Q16610 540 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 COBLL1Q53SF7 1204 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 TLCD1Q96CP7 247 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 UBA5Q9GZZ9 404 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 C6orf50Q9HD87 102 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 MLXIPLQ9NP71 852 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 KCNG1Q9UIX4 513 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 ABCB11O95342 1321 aa17.28■□□□□ 0.36
CKAP4-201ENST00000378026 COL18A1P39060 1754 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 MYH1P12882 1939 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 MYH4Q9Y623 1939 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 MARCH6O60337 910 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 ADAM9Q13443 819 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 FAM26FQ5R3K3 315 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 DAGLBQ8NCG7 672 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 EBF2Q9HAK2 575 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 SLC12A4Q9UP95 1085 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 GNAQP50148 359 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 ALDH5A1P51649 535 aaPredicted RBP17.27■□□□□ 0.36
CKAP4-201ENST00000378026 SLC29A2Q14542 456 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 KRT79Q5XKE5 535 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 HOOK3Q86VS8 718 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 KCNV2Q8TDN2 545 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 U2AF1L4Q8WU68 220 aaKnown RBP17.27■□□□□ 0.36
CKAP4-201ENST00000378026 CALR3Q96L12 384 aaKnown RBP17.27■□□□□ 0.36
CKAP4-201ENST00000378026 ZMYND12Q9H0C1 365 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 AIPL1Q9NZN9 384 aa17.27■□□□□ 0.36
CKAP4-201ENST00000378026 THRAP3Q9Y2W1 955 aaKnown RBP17.27■□□□□ 0.36
CKAP4-201ENST00000378026 CCDC188H7C350 402 aa17.27■□□□□ 0.35
CKAP4-201ENST00000378026 TCERG1LQ5VWI1 586 aa17.27■□□□□ 0.35
CKAP4-201ENST00000378026 DENND2CQ68D51 928 aa17.27■□□□□ 0.35
CKAP4-201ENST00000378026 IRF2BP2Q7Z5L9 587 aa17.27■□□□□ 0.35
CKAP4-201ENST00000378026 EIF1ADQ8N9N8 165 aaKnown RBP17.27■□□□□ 0.35
CKAP4-201ENST00000378026 FAM84BQ96KN1 310 aaPredicted RBP17.27■□□□□ 0.35
CKAP4-201ENST00000378026 ZNF570Q96NI8 536 aa17.27■□□□□ 0.35
CKAP4-201ENST00000378026 OSGEPQ9NPF4 335 aa17.27■□□□□ 0.35
CKAP4-201ENST00000378026 FAM114A2Q9NRY5 505 aa17.27■□□□□ 0.35
CKAP4-201ENST00000378026 ALS2Q96Q42 1657 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 IGF2BP3O00425 579 aaKnown RBP eCLIP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 ABCB4P21439 1286 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 SLC8A3P57103 927 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 IFI16Q16666 785 aaKnown RBP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 TMEM266Q2M3C6 531 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 DCAF17Q5H9S7 520 aaPredicted RBP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 GJB7Q6PEY0 223 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 DYDC1Q8WWB3 177 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 ATXN2LQ8WWM7 1075 aaKnown RBP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 PIGSQ96S52 555 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 TMEM47Q9BQJ4 181 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 GANQ9H2C0 597 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 ECT2Q9H8V3 914 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 DBR1Q9UK59 544 aaKnown RBP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 ADAMTS2O95450 1211 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 PMS2P54278 862 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 HERC4Q5GLZ8 1057 aaPredicted RBP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 GALNT17Q6IS24 598 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 OTUD6AQ7L8S5 288 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 DGKHQ86XP1 1220 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 TRIM59Q8IWR1 403 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 EPS8L3Q8TE67 593 aaKnown RBP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 RNF25Q96BH1 459 aaPredicted RBP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 ADAM7Q9H2U9 754 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 ARPP21Q9UBL0 812 aaPredicted RBP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 STK17AQ9UEE5 414 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 TRIM33Q9UPN9 1127 aa17.26■□□□□ 0.35
CKAP4-201ENST00000378026 NIP7Q9Y221 180 aaKnown RBP eCLIP17.26■□□□□ 0.35
CKAP4-201ENST00000378026 PLCH1Q4KWH8 1693 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 KRT13P13646 458 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 MKRN4PQ13434 485 aaPredicted RBP17.25■□□□□ 0.35
CKAP4-201ENST00000378026 PIGWQ7Z7B1 504 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 ZNF444Q8N0Y2 327 aaPredicted RBP17.25■□□□□ 0.35
CKAP4-201ENST00000378026 REXO1Q8N1G1 1221 aaKnown RBP17.25■□□□□ 0.35
CKAP4-201ENST00000378026 ARMC2Q8NEN0 867 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 ATP8B4Q8TF62 1192 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 NOP53Q9NZM5 478 aaKnown RBP17.25■□□□□ 0.35
CKAP4-201ENST00000378026 NQO1P15559 274 aaKnown RBP17.25■□□□□ 0.35
CKAP4-201ENST00000378026 GNA11P29992 359 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 SARNPP82979 210 aaKnown RBP17.25■□□□□ 0.35
CKAP4-201ENST00000378026 DR1Q01658 176 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 ZKSCAN8Q15776 578 aaPredicted RBP17.25■□□□□ 0.35
CKAP4-201ENST00000378026 ERICH1Q86X53 443 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 MAB21L3Q8N8X9 362 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 FBXO25Q8TCJ0 367 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 NEK9Q8TD19 979 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 YIPF3Q9GZM5 350 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 SLITRK6Q9H5Y7 841 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 ERVK-5Q9HDB9 667 aa17.25■□□□□ 0.35
CKAP4-201ENST00000378026 SAP30BPQ9UHR5 308 aaKnown RBP17.25■□□□□ 0.35
CKAP4-201ENST00000378026 E9PMD0 336 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 FGFR4P22455 802 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 ZCWPW2Q504Y3 356 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 CAPRIN2Q6IMN6 1127 aaKnown RBP17.24■□□□□ 0.35
CKAP4-201ENST00000378026 AADACL2Q6P093 401 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 PROM2Q8N271 834 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 RBM46Q8TBY0 533 aaKnown RBP17.24■□□□□ 0.35
CKAP4-201ENST00000378026 COA7Q96BR5 231 aa17.24■□□□□ 0.35
CKAP4-201ENST00000378026 SEMA4AQ9H3S1 761 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms