RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 SMYD3Q9H7B4 428 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 TADA3O75528 432 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 BCAMP50895 628 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 RRAGDQ9NQL2 400 aaPredicted RBP13.37□□□□□ -0.27
VPS13A-204ENST00000376634 GCFC2P16383 781 aaKnown RBP13.37□□□□□ -0.27
VPS13A-204ENST00000376634 NR1D1P20393 614 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 MAN2A1Q16706 1144 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 WDR11Q9BZH6 1224 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 CHCHD3Q9NX63 227 aaKnown RBP13.37□□□□□ -0.27
VPS13A-204ENST00000376634 NXF1Q9UBU9 619 aaKnown RBP13.37□□□□□ -0.27
VPS13A-204ENST00000376634 NINQ8N4C6 2090 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 PAPOLAP51003 745 aaKnown RBP13.37□□□□□ -0.27
VPS13A-204ENST00000376634 TAGAPQ8N103 731 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 ENAHQ8N8S7 591 aaPredicted RBP13.37□□□□□ -0.27
VPS13A-204ENST00000376634 YEATS2Q9ULM3 1422 aa13.37□□□□□ -0.27
VPS13A-204ENST00000376634 KRT87PA6NCN2 255 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 SEMA3EO15041 775 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 TBC1D10BQ4KMP7 808 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-204ENST00000376634 MYH1P12882 1939 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 MYH2Q9UKX2 1941 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 MYH4Q9Y623 1939 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 CCDC151A5D8V7 595 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 ZMYND10O75800 440 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 ZRANB2O95218 330 aaKnown RBP eCLIP13.36□□□□□ -0.273e-7■■■■■ 46.6
VPS13A-204ENST00000376634 ARPP19P56211 112 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 ZC3H12BQ5HYM0 836 aaKnown RBP13.36□□□□□ -0.27
VPS13A-204ENST00000376634 TRIML2Q8N7C3 387 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 TRPV6Q9H1D0 765 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 WARS2Q9UGM6 360 aaKnown RBP13.36□□□□□ -0.27
VPS13A-204ENST00000376634 GYG1P46976 350 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 ARHGAP27Q6ZUM4 889 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 KCTD1Q719H9 257 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 MTRQ99707 1265 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 BCS1LQ9Y276 419 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 PSAPP07602 524 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 SERPINB10P48595 397 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 NEK9Q8TD19 979 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 LCMT1Q9UIC8 334 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 HOXA7P31268 230 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-204ENST00000376634 HDAC4P56524 1084 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 STX19Q8N4C7 294 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 ZBTB38Q8NAP3 1195 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-204ENST00000376634 STRIP2Q9ULQ0 834 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 MDM2Q00987 491 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-204ENST00000376634 SCARA5Q6ZMJ2 495 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 ARHGEF1Q92888 912 aaKnown RBP13.36□□□□□ -0.27
VPS13A-204ENST00000376634 DYDC2Q96IM9 177 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 SYTL2Q9HCH5 934 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 SERPING1P05155 500 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 A0A1B0GW55 424 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 APBA3O96018 575 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 DUX4L2P0CJ85 424 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 DUX4L3P0CJ86 424 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 DUX4L4P0CJ87 422 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 DUX4L5P0CJ88 424 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 DUX4L6P0CJ89 424 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 DUX4L7P0CJ90 424 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 NR1H3Q13133 447 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 TRIP13Q15645 432 aaPredicted RBP13.36□□□□□ -0.27
VPS13A-204ENST00000376634 RNF14Q9UBS8 474 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 DUX4Q9UBX2 424 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 RWDD2AQ9UIY3 292 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 XDHP47989 1333 aa13.36□□□□□ -0.27
VPS13A-204ENST00000376634 KRT37O76014 449 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 SLC35F6Q8N357 371 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 CLIC6Q96NY7 704 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 CYTH2Q99418 400 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 TNNQ9UQP3 1299 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 E5RI56 91 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 A1BGP04217 495 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 FKBP3Q00688 224 aaKnown RBP13.35□□□□□ -0.27
VPS13A-204ENST00000376634 FASTKD5Q7L8L6 764 aaKnown RBP13.35□□□□□ -0.27
VPS13A-204ENST00000376634 USP21Q9UK80 565 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 PPEF1O14829 653 aaPredicted RBP13.35□□□□□ -0.27
VPS13A-204ENST00000376634 SPARCL1Q14515 664 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 RBM46Q8TBY0 533 aaKnown RBP13.35□□□□□ -0.27
VPS13A-204ENST00000376634 TESK2Q96S53 571 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 MAGEB5Q9BZ81 275 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 AFDNP55196 1824 aaKnown RBP13.35□□□□□ -0.27
VPS13A-204ENST00000376634 NCKAP5LQ9HCH0 1330 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 BNIP3LO60238 219 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 CD58P19256 250 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 PATL1Q86TB9 770 aaKnown RBP13.35□□□□□ -0.27
VPS13A-204ENST00000376634 TTC8Q8TAM2 541 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 TMEM60Q9H2L4 133 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 ZWILCHQ9H900 591 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 TMEM63CQ9P1W3 806 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 CEP170P1Q96L14 293 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 ATP5HO75947 161 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 TMPRSS15P98073 1019 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 GRIN1Q05586 938 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 GUCY2CP25092 1073 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 RBBP7Q16576 425 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 CDO1Q16878 200 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 P2RX5Q93086 422 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 SELENONQ9NZV5 590 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 CLIC4Q9Y696 253 aa13.35□□□□□ -0.27
VPS13A-204ENST00000376634 NEMP1O14524 444 aa13.34□□□□□ -0.27
VPS13A-204ENST00000376634 KRT27Q7Z3Y8 459 aa13.34□□□□□ -0.27
VPS13A-204ENST00000376634 SCG3Q8WXD2 468 aaKnown RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms