RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 IQUBQ8NA54 791 aa8.65□□□□□ -1.02
USP48-203ENST00000374732 CACTINQ8WUQ7 758 aaKnown RBP8.65□□□□□ -1.02
USP48-203ENST00000374732 LMBR1Q8WVP7 490 aa8.65□□□□□ -1.02
USP48-203ENST00000374732 TGIF2Q9GZN2 237 aa8.65□□□□□ -1.02
USP48-203ENST00000374732 INPP5FQ9Y2H2 1132 aa8.65□□□□□ -1.02
USP48-203ENST00000374732 R3HDM2Q9Y2K5 976 aaKnown RBP8.65□□□□□ -1.02
USP48-203ENST00000374732 BCL9LQ86UU0 1499 aa8.65□□□□□ -1.03
USP48-203ENST00000374732 A0A087WUV0 522 aaPredicted RBP8.64□□□□□ -1.03
USP48-203ENST00000374732 PDLIM1O00151 329 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 MCF2LO15068 1137 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 NR1I2O75469 434 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 RHOXF2BP0C7M4 288 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 RXRGP48443 463 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 GSTO1P78417 241 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 BASP1P80723 227 aaKnown RBP8.64□□□□□ -1.03
USP48-203ENST00000374732 TWF2Q6IBS0 349 aaKnown RBP8.64□□□□□ -1.03
USP48-203ENST00000374732 KDELC1Q6UW63 502 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 SPOCD1Q6ZMY3 1216 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 DEPTORQ8TB45 409 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 DTNBP1Q96EV8 351 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 FAM20AQ96MK3 541 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 OSBPL9Q96SU4 736 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 RHOXF2Q9BQY4 288 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 VPS45Q9NRW7 570 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 DDX19BQ9UMR2 479 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 USP6P35125 1406 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 TNS3Q68CZ2 1445 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 TRIM43BA6NCK2 446 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 EXTL3O43909 919 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 DDHD2O94830 711 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 BCRP11274 1271 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 GNAI1P63096 354 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 BEX3Q00994 111 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 MCTP1Q6DN14 999 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 CEP57Q86XR8 500 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 SMC1BQ8NDV3 1235 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 SMARCE1Q969G3 411 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 CMTM3Q96MX0 182 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 HERPUD2Q9BSE4 406 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 NCOA5Q9HCD5 579 aaKnown RBP8.64□□□□□ -1.03
USP48-203ENST00000374732 ATP11BQ9Y2G3 1177 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 TTC21BQ7Z4L5 1316 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 TTC21AQ8NDW8 1320 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 TMEM232C9JQI7 657 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 ZBTB14O43829 449 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 PRKACBP22694 351 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 CNGA1P29973 690 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 INTS3Q68E01 1043 aaKnown RBP8.64□□□□□ -1.03
USP48-203ENST00000374732 NOC3LQ8WTT2 800 aaKnown RBP8.64□□□□□ -1.03
USP48-203ENST00000374732 SSH1Q8WYL5 1049 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 ARMC5Q96C12 935 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 CATSPER2Q96P56 530 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 GALNT8Q9NY28 637 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 SH3BGRL2Q9UJC5 107 aa8.64□□□□□ -1.03
USP48-203ENST00000374732 DLG5Q8TDM6 1919 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 ZSCAN5CA6NGD5 496 aaPredicted RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 VAC14Q08AM6 782 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 FUT2Q10981 343 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 MSLNQ13421 630 aaPredicted RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 CCDC183Q5T5S1 534 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 RCSD1Q6JBY9 416 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 DPY19L2Q6NUT2 758 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 XRRA1Q6P2D8 792 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 MZT2AQ6P582 158 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 SLC2A7Q6PXP3 512 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 C3orf67Q6ZVT6 689 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.63□□□□□ -1.036e-6■■■■□ 22.5
USP48-203ENST00000374732 PCDHB15Q9Y5E8 787 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 PHRF1Q9P1Y6 1649 aaKnown RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 VWA5AO00534 786 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 TRIM27P14373 513 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 HOXC12P31275 282 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 GUCY1A2P33402 732 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 MLH1P40692 756 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 PPP1R2P41236 205 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 VPS41P49754 854 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 ARHGDIBP52566 201 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 ZNF211Q13398 564 aaPredicted RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 MORC3Q14149 939 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 FAM209AQ5JX71 171 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 LIN54Q6MZP7 749 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 PPP1R2P3Q6NXS1 205 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 TBC1D1Q86TI0 1168 aaPredicted RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 SYT2Q8N9I0 419 aaPredicted RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 KAT2BQ92831 832 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 DRC3Q9H069 523 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 CCDC113Q9H0I3 377 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 PTBP2Q9UKA9 531 aaKnown RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 AGO2Q9UKV8 859 aaKnown RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 MTF2Q9Y483 593 aaPredicted RBP8.63□□□□□ -1.03
USP48-203ENST00000374732 EMILIN1Q9Y6C2 1016 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 AFF2P51816 1311 aa8.63□□□□□ -1.03
USP48-203ENST00000374732 C17orf113A0A1B0GUU1 675 aa8.62□□□□□ -1.03
USP48-203ENST00000374732 ANKRD65E5RJM6 399 aa8.62□□□□□ -1.03
USP48-203ENST00000374732 CACNB4O00305 520 aaPredicted RBP8.62□□□□□ -1.03
USP48-203ENST00000374732 SIN3BO75182 1162 aa8.62□□□□□ -1.03
USP48-203ENST00000374732 CD4P01730 458 aa8.62□□□□□ -1.03
USP48-203ENST00000374732 ZKSCAN1P17029 563 aaPredicted RBP8.62□□□□□ -1.03
USP48-203ENST00000374732 TPM4P67936 248 aa8.62□□□□□ -1.03
USP48-203ENST00000374732 CCNA1P78396 465 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms