RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CHGBP05060 677 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ZBED6P86452 979 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF543Q08ER8 600 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 COG2Q14746 738 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 LGSNQ5TDP6 509 aa12.57□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF233A6NK53 670 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 KRIT1O00522 736 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 RUFY4Q6ZNE9 571 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 PNMA8AQ86V59 439 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 TRIM7Q9C029 511 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 DEFB129Q9H1M3 183 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 SAMD15Q9P1V8 674 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 DDNO94850 711 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 RPS12P25398 132 aaKnown RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 YY1P25490 414 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 SLC12A2P55011 1212 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 PLCB4Q15147 1175 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 LPAR1Q92633 364 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 HEXIM2Q96MH2 286 aaKnown RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 PXDNLA1KZ92 1463 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 KDM4FA0A1W2PPD8 638 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 TDP2O95551 362 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 ATN1P54259 1190 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 TAOK1Q7L7X3 1001 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 DYDC2Q96IM9 177 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 QRICH2Q9H0J4 1663 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 GPR75-ASB3A0A0A6YYF3 556 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 PPP1R2P3Q6NXS1 205 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 TEX13BQ9BXU2 312 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF609O15014 1411 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 TXNP10599 105 aaKnown RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 HPDP32754 393 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 QARSP47897 775 aaKnown RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 MYO1EQ12965 1108 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 MTMR3Q13615 1198 aa12.56□□□□□ -0.4
SYNE1-204ENST00000367248 CPSF3Q9UKF6 684 aaKnown RBP12.56□□□□□ -0.4
SYNE1-204ENST00000367248 TTBK2Q6IQ55 1244 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 ELMOD1Q8N336 334 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 RNF139Q8WU17 664 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 ZKSCAN4Q969J2 545 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 VPS37BQ9H9H4 285 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 GCNT4Q9P109 453 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 DDX41Q9UJV9 622 aaKnown RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 A6NJR5 290 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 C19orf81C9J6K1 198 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 IPO5O00410 1097 aaKnown RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 RASA1P20936 1047 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 USP11P51784 963 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 CYFIP1Q7L576 1253 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 CTAGE3PQ8IX95 158 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 AGBL3Q8NEM8 1001 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 EPB41L4AQ9HCS5 686 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 LDHAP00338 332 aaKnown RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 PTPN21Q16825 1174 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 SRBD1Q8N5C6 995 aaKnown RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 GDAP1Q8TB36 358 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 RAD54LQ92698 747 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 PARK7Q99497 189 aaKnown RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 POTEB3A0JP26 581 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 ASB14A6NK59 587 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 POTECB2RU33 542 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 RBL2Q08999 1139 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 POTEBQ6S5H4 581 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 HAUS1Q96CS2 278 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 DDX23Q9BUQ8 820 aaKnown RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 SUDS3Q9H7L9 328 aaPredicted RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 EPHX2P34913 555 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 EHHADHQ08426 723 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 DCLK2Q8N568 766 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 GRK7Q8WTQ7 553 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 PSPC1Q8WXF1 523 aaKnown RBP12.55□□□□□ -0.4
SYNE1-204ENST00000367248 SH2D3AQ9BRG2 576 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 MEGF6O75095 1541 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 EBAG9O00559 213 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 CEP55Q53EZ4 464 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 SIX6OS1Q8N1H7 587 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 SLC38A10Q9HBR0 1119 aa12.55□□□□□ -0.4
SYNE1-204ENST00000367248 PSMC5P62195 406 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 MESDQ14696 234 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 SETDB1Q15047 1291 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 MAPK6Q16659 721 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 POTEDQ86YR6 584 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 CCNYQ8ND76 341 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 ZNF302Q9NR11 478 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 SPDYE2BA6NHP3 402 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 SPDYE6P0CI01 402 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 INTS8Q75QN2 995 aaKnown RBP12.54□□□□□ -0.4
SYNE1-204ENST00000367248 VCPKMTQ9H867 229 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 GABBR1Q9UBS5 961 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 URGCPQ8TCY9 931 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 UBE2TQ9NPD8 197 aaPredicted RBP12.54□□□□□ -0.4
SYNE1-204ENST00000367248 PHLPP2Q6ZVD8 1323 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 HDLBPQ00341 1268 aaKnown RBP12.54□□□□□ -0.4
SYNE1-204ENST00000367248 CCDC6Q16204 474 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 NOC2LQ9Y3T9 749 aaKnown RBP12.54□□□□□ -0.4
SYNE1-204ENST00000367248 CDC25BP30305 580 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 SARNPP82979 210 aaKnown RBP12.54□□□□□ -0.4
SYNE1-204ENST00000367248 FAM133AQ8N9E0 248 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 CCDC110Q8TBZ0 833 aa12.54□□□□□ -0.4
SYNE1-204ENST00000367248 IFT122Q9HBG6 1241 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms