RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 MAPK8IP1Q9UQF2 711 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 IGSF9BQ9UPX0 1349 aa20.7■□□□□ 0.9
CLN3-206ENST00000360019 IGKV6D-21A0A0A0MT36 114 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 GOLGA6L19H0YKK7 550 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 AP5Z1O43299 807 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 PTGS1P23219 599 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 ERCC5P28715 1186 aaPredicted RBP20.69■□□□□ 0.9
CLN3-206ENST00000360019 MYL5Q02045 173 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 CT47A1Q5JQC4 288 aaPredicted RBP20.69■□□□□ 0.9
CLN3-206ENST00000360019 KLHL10Q6JEL2 608 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 TRMT44Q8IYL2 757 aaKnown RBP20.69■□□□□ 0.9
CLN3-206ENST00000360019 ADSSL1Q8N142 457 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 MSL3Q8N5Y2 521 aaKnown RBP20.69■□□□□ 0.9
CLN3-206ENST00000360019 ATP6V0A1Q93050 837 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 ARHGAP39Q9C0H5 1083 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 FLRT1Q9NZU1 646 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 LOXHD1Q8IVV2 1947 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 ARHGEF35A5YM69 484 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 STBD1O95210 358 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 HSDL1Q3SXM5 330 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 UTP14CQ5TAP6 766 aaKnown RBP20.69■□□□□ 0.9
CLN3-206ENST00000360019 ANO5Q75V66 913 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 CCDC65Q8IXS2 484 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 SOCS4Q8WXH5 440 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 PCYT2Q99447 389 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 HSD3B7Q9H2F3 369 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 SLC39A2Q9NP94 309 aa20.69■□□□□ 0.9
CLN3-206ENST00000360019 ZSWIM8A7E2V4 1837 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 RSPH10B2B2RC85 870 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 BACH1O14867 736 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 TBC1D8O95759 1140 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 RSPH10BP0C881 870 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 CYP2B6P20813 491 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 ADCYAP1R1P41586 468 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 VEGFBP49765 207 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 LACTBP83111 547 aaPredicted RBP20.68■□□□□ 0.9
CLN3-206ENST00000360019 TRMT1LQ7Z2T5 733 aaKnown RBP20.68■□□□□ 0.9
CLN3-206ENST00000360019 DHX37Q8IY37 1157 aaKnown RBP20.68■□□□□ 0.9
CLN3-206ENST00000360019 SH2D3AQ9BRG2 576 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 ABHD16BQ9H3Z7 469 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 MAFBQ9Y5Q3 323 aaPredicted RBP20.68■□□□□ 0.9
CLN3-206ENST00000360019 HTTP42858 3142 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 MGAMO43451 1857 aa20.68■□□□□ 0.9
CLN3-206ENST00000360019 SMTNL1A8MU46 457 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 RGS2P41220 211 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 PRKCEQ02156 737 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 ACVR2BQ13705 512 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 CCL14Q16627 93 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 GJC2Q5T442 439 aaPredicted RBP20.67■□□□□ 0.9
CLN3-206ENST00000360019 PLA2G4FQ68DD2 849 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 PADI6Q6TGC4 694 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 ENOX1Q8TC92 643 aaKnown RBP20.67■□□□□ 0.9
CLN3-206ENST00000360019 SEPT1Q8WYJ6 367 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 GPR20Q99678 358 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 POLD4Q9HCU8 107 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 ZNF302Q9NR11 478 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 KCND2Q9NZV8 630 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 CTNND2Q9UQB3 1225 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 PCDHA2Q9Y5H9 948 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 DKC1O60832 514 aaKnown RBP eCLIP20.67■□□□□ 0.9
CLN3-206ENST00000360019 ATP4AP20648 1035 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 TCF7P36402 384 aaPredicted RBP20.67■□□□□ 0.9
CLN3-206ENST00000360019 STX17P56962 302 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 PSMD2Q13200 908 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 COBLL1Q53SF7 1204 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 FAM26FQ5R3K3 315 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 GLIS3Q8NEA6 775 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 TRIM47Q96LD4 638 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 APBA2Q99767 749 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 GTPBP4Q9BZE4 634 aaKnown RBP20.67■□□□□ 0.9
CLN3-206ENST00000360019 ANKEF1Q9NU02 776 aa20.67■□□□□ 0.9
CLN3-206ENST00000360019 SYNRGQ9UMZ2 1314 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.66■□□□□ 0.9
CLN3-206ENST00000360019 GUCY2CP25092 1073 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 MAP2K2P36507 400 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 PSMC4P43686 418 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 NPEPPSP55786 919 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 FCGRTP55899 365 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 ARHGAP1Q07960 439 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 PAK1Q13153 545 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 HERC4Q5GLZ8 1057 aaPredicted RBP20.66■□□□□ 0.9
CLN3-206ENST00000360019 SPATA33Q96N06 139 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 CFHR5Q9BXR6 569 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 FGFBP2Q9BYJ0 223 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 ZHX3Q9H4I2 956 aa20.66■□□□□ 0.9
CLN3-206ENST00000360019 ZHX1Q9UKY1 873 aaPredicted RBP20.66■□□□□ 0.9
CLN3-206ENST00000360019 IGHA2P01877 340 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 PLCB2Q00722 1185 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 CAP1Q01518 475 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 XKR9Q5GH70 373 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 NELFBQ8WX92 580 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 RNF186Q9NXI6 227 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 TBC1D7Q9P0N9 293 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 RWDD2AQ9UIY3 292 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 NFE2L3Q9Y4A8 694 aa20.65■□□□□ 0.9
CLN3-206ENST00000360019 MYH9P35579 1960 aaKnown RBP20.65■□□□□ 0.9
CLN3-206ENST00000360019 NOP56O00567 594 aaKnown RBP20.64■□□□□ 0.9
CLN3-206ENST00000360019 TBCAO75347 108 aaKnown RBP20.64■□□□□ 0.9
CLN3-206ENST00000360019 CYP2C19P33261 490 aa20.64■□□□□ 0.9
CLN3-206ENST00000360019 PMS1P54277 932 aaKnown RBP20.64■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms