RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 SNX25Q9H3E2 840 aa12.67□□□□□ -0.38
COL9A1-202ENST00000357250 DONSONQ9NYP3 566 aa12.67□□□□□ -0.38
COL9A1-202ENST00000357250 BAG5Q9UL15 447 aa12.67□□□□□ -0.38
COL9A1-202ENST00000357250 NEDD4P46934 1319 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 RBBP5Q15291 538 aaKnown RBP12.66□□□□□ -0.38
COL9A1-202ENST00000357250 NXNQ6DKJ4 435 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 MORC4Q8TE76 937 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 NLRP7Q8WX94 980 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 SDCCAG3Q96C92 435 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 CLIC2O15247 247 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 CLTAP09496 248 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 FAM47CQ5HY64 1035 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 KCTD16Q68DU8 428 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 TTC13Q8NBP0 860 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 TCP11Q8WWU5 503 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 KAZALD1Q96I82 304 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 PDLIM2Q96JY6 352 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 FAM167AQ96KS9 214 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 NARFQ9UHQ1 456 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 USP42Q9H9J4 1324 aaKnown RBP12.66□□□□□ -0.38
COL9A1-202ENST00000357250 PLEKHA8P1O95397 391 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 TTC4O95801 387 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 NR1D1P20393 614 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 SRRM1Q8IYB3 904 aaKnown RBP12.66□□□□□ -0.38
COL9A1-202ENST00000357250 PDIK1LQ8N165 341 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 GIMAP8Q8ND71 665 aaPredicted RBP12.66□□□□□ -0.38
COL9A1-202ENST00000357250 RUBCNQ92622 972 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 EPS15L1Q9UBC2 864 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 SLC12A6Q9UHW9 1150 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 RRP15Q9Y3B9 282 aaKnown RBP12.66□□□□□ -0.38
COL9A1-202ENST00000357250 LRRN2O75325 713 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 MT-ND3P03897 115 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 FDX1P10109 184 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 ATP1A3P13637 1013 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 ECE1P42892 770 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 KCNJ6P48051 423 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 STX1BP61266 288 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 RABL6Q3YEC7 729 aaPredicted RBP12.66□□□□□ -0.38
COL9A1-202ENST00000357250 ARMCX2Q7L311 632 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 FBXO41Q8TF61 875 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 TBC1D22BQ9NU19 505 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 FBXO40Q9UH90 709 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 PTPN22Q9Y2R2 807 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 TMEM131LA2VDJ0 1609 aa12.66□□□□□ -0.38
COL9A1-202ENST00000357250 PNPLA7Q6ZV29 1317 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 A0A1W2PQC6 194 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 FTCDO95954 541 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 IFT88Q13099 833 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 PPP2R5CQ13362 524 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 ITPK1Q13572 414 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 CENPUQ71F23 418 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 UHMK1Q8TAS1 419 aaKnown RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 RBM41Q96IZ5 413 aaKnown RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 TRIM56Q9BRZ2 755 aaKnown RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 ZMYND12Q9H0C1 365 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 ATF5Q9Y2D1 282 aaPredicted RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 CEMIPQ8WUJ3 1361 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 ZBTB24O43167 697 aaPredicted RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 SLC26A4O43511 780 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 ORC4O43929 436 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 UBXN2AP68543 259 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 GRM4Q14833 912 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 EFHD1Q9BUP0 239 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 ABHD10Q9NUJ1 306 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 SEPT10Q9P0V9 454 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 TYW5A2RUC4 315 aaKnown RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 SEC31AO94979 1220 aaKnown RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 C2orf54Q08AI8 447 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 GUF1Q8N442 669 aaKnown RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 ZC3H15Q8WU90 426 aaKnown RBP12.65□□□□□ -0.38
COL9A1-202ENST00000357250 TTC1Q99614 292 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 BHMT2Q9H2M3 363 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 FAM96AQ9H5X1 160 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 TECPR2O15040 1411 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 VWDEQ8N2E2 1590 aa12.65□□□□□ -0.38
COL9A1-202ENST00000357250 PRPSAP2O60256 369 aa12.65□□□□□ -0.39
COL9A1-202ENST00000357250 ZNF189O75820 626 aaPredicted RBP12.65□□□□□ -0.39
COL9A1-202ENST00000357250 S100BP04271 92 aaPredicted RBP12.65□□□□□ -0.39
COL9A1-202ENST00000357250 PTPROQ16827 1216 aa12.65□□□□□ -0.39
COL9A1-202ENST00000357250 RC3H1Q5TC82 1133 aaKnown RBP12.65□□□□□ -0.39
COL9A1-202ENST00000357250 TTC39CQ8N584 583 aa12.65□□□□□ -0.39
COL9A1-202ENST00000357250 AP5M1Q9H0R1 490 aa12.65□□□□□ -0.39
COL9A1-202ENST00000357250 FGFR1OP2Q9NVK5 253 aa12.65□□□□□ -0.39
COL9A1-202ENST00000357250 IQANK1A0A1B0GTG1 560 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 GRID2IPA4D2P6 1211 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 GOLGA8FQ08AF8 430 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 GOLGA8DPQ0D2H9 430 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 DPP9Q86TI2 863 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 SH3RF3Q8TEJ3 882 aaPredicted RBP12.64□□□□□ -0.39
COL9A1-202ENST00000357250 FAM149B1Q96BN6 582 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 KLHL29Q96CT2 875 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 MASTLQ96GX5 879 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 SLC38A10Q9HBR0 1119 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 ADAMTS1Q9UHI8 967 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 AKT3Q9Y243 479 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 POLR1AO95602 1720 aaPredicted RBP12.64□□□□□ -0.39
COL9A1-202ENST00000357250 K7ERI5 159 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 PNMA6AP0CW24 399 aaPredicted RBP12.64□□□□□ -0.39
COL9A1-202ENST00000357250 RXRBP28702 533 aa12.64□□□□□ -0.39
COL9A1-202ENST00000357250 SATB1Q01826 763 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms