RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 COL9A3Q14050 684 aaPredicted RBP13.37□□□□□ -0.27
COLCA1-201ENST00000355430 PPP2R5EQ16537 467 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 Q3C1V9 767 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 SLC17A8Q8NDX2 589 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 AGBL3Q8NEM8 1001 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.37□□□□□ -0.27
COLCA1-201ENST00000355430 PTPN22Q9Y2R2 807 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 FAM169AQ9Y6X4 670 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 ESYT3A0FGR9 886 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 N4BP1O75113 896 aaKnown RBP13.37□□□□□ -0.27
COLCA1-201ENST00000355430 FAM178BQ8IXR5 827 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 GIMAP8Q8ND71 665 aaPredicted RBP13.37□□□□□ -0.27
COLCA1-201ENST00000355430 TSNARE1Q96NA8 513 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 MTIF3Q9H2K0 278 aaKnown RBP13.37□□□□□ -0.27
COLCA1-201ENST00000355430 VPS41P49754 854 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 CDC37Q16543 378 aaPredicted RBP13.37□□□□□ -0.27
COLCA1-201ENST00000355430 CCDC63Q8NA47 563 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 TMEM47Q9BQJ4 181 aa13.37□□□□□ -0.27
COLCA1-201ENST00000355430 NOVA2Q9UNW9 492 aaKnown RBP13.37□□□□□ -0.27
COLCA1-201ENST00000355430 LRRIQ4A6NIV6 560 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 STX2P32856 288 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 IFNAR2P48551 515 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 ANKRD40Q6AI12 368 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 SLC44A5Q8NCS7 719 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 MYCBPQ99417 103 aaPredicted RBP13.36□□□□□ -0.27
COLCA1-201ENST00000355430 MMP19Q99542 508 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 TMEM260Q9NX78 707 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 LARSQ9P2J5 1176 aaKnown RBP13.36□□□□□ -0.27
COLCA1-201ENST00000355430 ARHGEF37A1IGU5 675 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 K7ENM7 598 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 PSMD14O00487 310 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 MMP14P50281 582 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 MYL7Q01449 175 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 RASA3Q14644 834 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 STAG2Q8N3U4 1231 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 HAUS2Q9NVX0 235 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 GCNT4Q9P109 453 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 AGTPBP1Q9UPW5 1226 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 PPP1R3GB7ZBB8 358 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 TRIM66O15016 1216 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 TNNI1P19237 187 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 SRLQ86TD4 932 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 NOA1Q8NC60 698 aaKnown RBP13.36□□□□□ -0.27
COLCA1-201ENST00000355430 ZNF512BQ96KM6 892 aaPredicted RBP13.36□□□□□ -0.27
COLCA1-201ENST00000355430 AGXT2Q9BYV1 514 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 TARSL2A2RTX5 802 aaKnown RBP13.36□□□□□ -0.27
COLCA1-201ENST00000355430 GCFC2P16383 781 aaKnown RBP13.36□□□□□ -0.27
COLCA1-201ENST00000355430 PLTPP55058 493 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 GRM4Q14833 912 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 FYB2Q5VWT5 728 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 CEP72Q9P209 647 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 PCDHA6Q9UN73 950 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 PCDHA8Q9Y5H6 950 aa13.36□□□□□ -0.27
COLCA1-201ENST00000355430 CLTAP09496 248 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 CETPP11597 493 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 ATP2A2P16615 1042 aaKnown RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 GLE1Q53GS7 698 aaKnown RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 SNRNP48Q6IEG0 339 aaKnown RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 HPS3Q969F9 1004 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 PNKPQ96T60 521 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 TACO1Q9BSH4 297 aaKnown RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 HOMER3Q9NSC5 361 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 TFR2Q9UP52 801 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 DAAM1Q9Y4D1 1078 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 PLSCR1O15162 318 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 CD44P16070 742 aaKnown RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 GBP1P32455 592 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 MESDQ14696 234 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 HHATQ5VTY9 493 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 KIAA1841Q6NSI8 718 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 TBC1D31Q96DN5 1066 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 LRRC1Q9BTT6 524 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 ADARB2Q9NS39 739 aaKnown RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 AGPAT5Q9NUQ2 364 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 NUB1Q9Y5A7 615 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 HMGB1P1B2RPK0 211 aaPredicted RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 PSAPP07602 524 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 KRT15P19012 456 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 PCK1P35558 622 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 STXBP2Q15833 593 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 FAM83BQ5T0W9 1011 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 CEP128Q6ZU80 1094 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 ADSSL1Q8N142 457 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 CCDC197Q8NCU1 140 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 GYS1P13807 737 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 ZNF131P52739 623 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 FAM186BQ8IYM0 893 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 RIN2Q8WYP3 895 aaPredicted RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 RAD54LQ92698 747 aa13.35□□□□□ -0.27
COLCA1-201ENST00000355430 MAGOHBQ96A72 148 aaKnown RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 INTS9Q9NV88 658 aaKnown RBP13.35□□□□□ -0.27
COLCA1-201ENST00000355430 GAS8O95995 478 aa13.34□□□□□ -0.27
COLCA1-201ENST00000355430 ABCD1P33897 745 aa13.34□□□□□ -0.27
COLCA1-201ENST00000355430 TOB1P50616 345 aaPredicted RBP13.34□□□□□ -0.27
COLCA1-201ENST00000355430 ELOA2Q8IYF1 753 aaPredicted RBP13.34□□□□□ -0.27
COLCA1-201ENST00000355430 NACC1Q96RE7 527 aa13.34□□□□□ -0.27
COLCA1-201ENST00000355430 MYOZ2Q9NPC6 264 aa13.34□□□□□ -0.27
COLCA1-201ENST00000355430 PACSIN2Q9UNF0 486 aaPredicted RBP13.34□□□□□ -0.27
COLCA1-201ENST00000355430 LRRN2O75325 713 aa13.34□□□□□ -0.27
COLCA1-201ENST00000355430 ADCY8P40145 1251 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms