RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 SYMPKQ92797 1274 aaKnown RBP11.14□□□□□ -0.63
SYNE1-203ENST00000354674 EPSTI1Q96J88 318 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 AK8Q96MA6 479 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 RNF146Q9NTX7 359 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 ANO10Q9NW15 660 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 ETAA1Q9NY74 926 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 DDX20Q9UHI6 824 aaKnown RBP11.14□□□□□ -0.63
SYNE1-203ENST00000354674 NDUFAB1O14561 156 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 KIF3CO14782 793 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 TBX3O15119 743 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 ERLIN1O75477 346 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 IRAK1P51617 712 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 HERVK_113P62684 666 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 KCTD16Q68DU8 428 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 EHMT1Q9H9B1 1298 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 SPATS2LQ9NUQ6 558 aaKnown RBP11.14□□□□□ -0.63
SYNE1-203ENST00000354674 RPS6KL1Q9Y6S9 549 aa11.14□□□□□ -0.63
SYNE1-203ENST00000354674 IGLV3-22A0A075B6J6 115 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 A0A087X0B3 334 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 TESPA1A2RU30 521 aaPredicted RBP11.13□□□□□ -0.63
SYNE1-203ENST00000354674 FAM86B1E9PN63 330 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 FAM86B2P0C5J1 330 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 OSBPP22059 807 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 UBASH3AP57075 661 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 PDIA5Q14554 519 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 ZNF569Q5MCW4 686 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 NCAPH2Q6IBW4 605 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 FCHSD1Q86WN1 690 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 CHST13Q8NET6 341 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 ETNPPLQ8TBG4 499 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 FAM71BQ8TC56 605 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 ABL1P00519 1130 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 RPS6P62753 249 aaKnown RBP11.13□□□□□ -0.63
SYNE1-203ENST00000354674 FANCCQ00597 558 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 PDCLQ13371 301 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 ANKRD23Q86SG2 305 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 CCSER1Q9C0I3 900 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 ACAD9Q9H845 621 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 LCTP09848 1927 aa11.13□□□□□ -0.63
SYNE1-203ENST00000354674 BACH1O14867 736 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 SYF2O95926 243 aaKnown RBP11.12□□□□□ -0.63
SYNE1-203ENST00000354674 MDM2Q00987 491 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-203ENST00000354674 BRD3Q15059 726 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 SLC30A10Q6XR72 485 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 RNF207Q6ZRF8 634 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 ARMC2Q8NEN0 867 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 MICAL1Q8TDZ2 1067 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 GTF3C2Q8WUA4 911 aaPredicted RBP11.12□□□□□ -0.63
SYNE1-203ENST00000354674 BRI3BPQ8WY22 251 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 NUCKS1Q9H1E3 243 aaKnown RBP11.12□□□□□ -0.63
SYNE1-203ENST00000354674 HOMER2Q9NSB8 354 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 RBPJLQ9UBG7 517 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 CHUKO15111 745 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 ACTN4O43707 911 aaKnown RBP11.12□□□□□ -0.63
SYNE1-203ENST00000354674 RPS6KA5O75582 802 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 C11orf91Q3C1V1 193 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 ACCSLQ4AC99 568 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 SPATC1LQ9H0A9 340 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 MRPL44Q9H9J2 332 aaKnown RBP11.12□□□□□ -0.63
SYNE1-203ENST00000354674 KLC4Q9NSK0 619 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 PCNX4Q63HM2 1172 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 SAPCD2Q86UD0 394 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 CAPZA3Q96KX2 299 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 PYM1Q9BRP8 204 aaKnown RBP11.12□□□□□ -0.63
SYNE1-203ENST00000354674 CYP39A1Q9NYL5 469 aa11.12□□□□□ -0.63
SYNE1-203ENST00000354674 BTBD19C9JJ37 291 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 POLR2DO15514 142 aaKnown RBP11.11□□□□□ -0.63
SYNE1-203ENST00000354674 CDR1P51861 262 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 IRX1P78414 480 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-203ENST00000354674 IFT88Q13099 833 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 KCTD19Q17RG1 926 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-203ENST00000354674 NIPA1Q7RTP0 329 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 SLFN12Q8IYM2 578 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 FAM20AQ96MK3 541 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 TAAR1Q96RJ0 339 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 MMTAG2Q9BU76 263 aaKnown RBP11.11□□□□□ -0.63
SYNE1-203ENST00000354674 GPBP1L1Q9HC44 474 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-203ENST00000354674 FBXO40Q9UH90 709 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 PNMA3Q9UL41 463 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 CCL15-CCL14A0A0B4J2E2 113 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 GOLGA6CA6NDK9 693 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 MEIS1O00470 390 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 GOLGA6DP0CG33 693 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 BCRP11274 1271 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 COPB2P35606 906 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 TECP42680 631 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 TXKP42681 527 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 RANBP1P43487 201 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 HUNKP57058 714 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 BAATQ14032 418 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-203ENST00000354674 CCL15Q16663 113 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 SH3RF1Q7Z6J0 888 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 RASAL3Q86YV0 1011 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 BAG1Q99933 345 aaPredicted RBP11.11□□□□□ -0.63
SYNE1-203ENST00000354674 TXNRD2Q9NNW7 524 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 A1CFQ9NQ94 594 aaKnown RBP11.11□□□□□ -0.63
SYNE1-203ENST00000354674 PXMP2Q9NR77 195 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 GOLGA6AQ9NYA3 693 aa11.11□□□□□ -0.63
SYNE1-203ENST00000354674 ZSCAN12O43309 604 aa11.1□□□□□ -0.63
SYNE1-203ENST00000354674 SLC25A27O95847 323 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms