RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 KBTBD4Q9NVX7 518 aa9.5□□□□□ -0.89
TRIM55-204ENST00000353317 BTBD7Q9P203 1132 aa9.5□□□□□ -0.89
TRIM55-204ENST00000353317 CSADQ9Y600 493 aa9.5□□□□□ -0.89
TRIM55-204ENST00000353317 SPDYE5A6NIY4 337 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 PSMA7O14818 248 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 NKRFO15226 690 aaKnown RBP eCLIP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 FOSP01100 380 aaPredicted RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 CYP3A4P08684 503 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 ARP10275 920 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 ITGB5P18084 799 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 UBA7P41226 1012 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 TNNT3P45378 269 aaPredicted RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 MRPS9P82933 396 aaKnown RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 Q4G0T1 1027 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 GSPT2Q8IYD1 628 aaKnown RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 CSGALNACT2Q8N6G5 542 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 COG1Q8WTW3 980 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 OPTNQ96CV9 577 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 DUSP9Q99956 384 aaKnown RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 LRWD1Q9UFC0 647 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 A0A0G2JLL6 359 aaPredicted RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 TARSL2A2RTX5 802 aaKnown RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 EML1O00423 815 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 CYP27A1Q02318 531 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 GHRHRQ02643 423 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 SNRNP48Q6IEG0 339 aaKnown RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 GADL1Q6ZQY3 521 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 PRRT2Q7Z6L0 340 aaPredicted RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 PNMA8AQ86V59 439 aaPredicted RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 EXOC1Q9NV70 894 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 MAGEC2Q9UBF1 373 aaPredicted RBP9.49□□□□□ -0.89
TRIM55-204ENST00000353317 PCDHA12Q9UN75 941 aa9.49□□□□□ -0.89
TRIM55-204ENST00000353317 A0A0G2JMZ2 1700 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 MACROD2A1Z1Q3 448 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 GCFC2P16383 781 aaKnown RBP9.48□□□□□ -0.89
TRIM55-204ENST00000353317 MCM3P25205 808 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 CYLC1P35663 651 aaPredicted RBP9.48□□□□□ -0.89
TRIM55-204ENST00000353317 PPATQ06203 517 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 TBC1D8BQ0IIM8 1120 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 FSTL1Q12841 308 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 ORC2Q13416 577 aaPredicted RBP9.48□□□□□ -0.89
TRIM55-204ENST00000353317 STIM1Q13586 685 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 BAATQ14032 418 aaPredicted RBP9.48□□□□□ -0.89
TRIM55-204ENST00000353317 PDIA5Q14554 519 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 MAP9Q49MG5 647 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 ERO1BQ86YB8 467 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 EHBP1Q8NDI1 1231 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 RPGRIP1Q96KN7 1286 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 HINFPQ9BQA5 517 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 PLEKHA4Q9H4M7 779 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 BCAS3Q9H6U6 928 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 TXNRD2Q9NNW7 524 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 RNF146Q9NTX7 359 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 TMOD4Q9NZQ9 345 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 RSPH14Q9UHP6 348 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 WDR81Q562E7 1941 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 ZNFX1Q9P2E3 1918 aaKnown RBP9.48□□□□□ -0.89
TRIM55-204ENST00000353317 ASTN1O14525 1302 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 RPTORQ8N122 1335 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 EIF3CLB5ME19 914 aaKnown RBP9.48□□□□□ -0.89
TRIM55-204ENST00000353317 AGPSO00116 658 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 ZNF263O14978 683 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 ZBED4O75132 1171 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 MED24O75448 989 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 MYL1P05976 194 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 GGCXP38435 758 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 MKRN3Q13064 507 aaKnown RBP9.48□□□□□ -0.89
TRIM55-204ENST00000353317 CST9Q5W186 159 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 ANKRD40Q6AI12 368 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 GPAT2Q6NUI2 795 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 MOXD1Q6UVY6 613 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 NSMFQ6X4W1 530 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 AFAP1L1Q8TED9 768 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 AK8Q96MA6 479 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 EIF3CQ99613 913 aaKnown RBP9.48□□□□□ -0.89
TRIM55-204ENST00000353317 WDR11Q9BZH6 1224 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 JADE2Q9NQC1 790 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 VAV3Q9UKW4 847 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 KCNH4Q9UQ05 1017 aa9.48□□□□□ -0.89
TRIM55-204ENST00000353317 CNMDO75829 334 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 PLEKP08567 350 aaPredicted RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 SPATA31C1P0DKV0 1188 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 IDEP14735 1019 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 EIF2AK2P19525 551 aaKnown RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 PSMC6P62333 389 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 ZBED6P86452 979 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 CKAP4Q07065 602 aaKnown RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 STK4Q13043 487 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 PLS1Q14651 629 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 Q3C1V9 767 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 MIIPQ5JXC2 388 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 CCNI2Q6ZMN8 369 aaPredicted RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 CCDC170Q8IYT3 715 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 RBM46Q8TBY0 533 aaKnown RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 HPS3Q969F9 1004 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 DHTKD1Q96HY7 919 aaPredicted RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 CNOT6LQ96LI5 555 aaKnown RBP9.47□□□□□ -0.89
TRIM55-204ENST00000353317 NUP58Q9BVL2 599 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 SELENOOQ9BVL4 669 aa9.47□□□□□ -0.89
TRIM55-204ENST00000353317 ZNHIT6Q9NWK9 470 aaKnown RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms