RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 ZFATQ9P243 1243 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 FAM187AA6NFU0 413 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 FGFR4P22455 802 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 SCTRP47872 440 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 FMR1Q06787 632 aaKnown RBP eCLIP13□□□□□ -0.33
COL12A1-202ENST00000345356 KDM7AQ6ZMT4 941 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 KRT82Q9NSB4 513 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 EMILIN3Q9NT22 766 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 RBM12Q9NTZ6 932 aaKnown RBP13□□□□□ -0.33
COL12A1-202ENST00000345356 ORC6Q9Y5N6 252 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 MAST1Q9Y2H9 1570 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 FRMPD2Q68DX3 1309 aaPredicted RBP13□□□□□ -0.33
COL12A1-202ENST00000345356 A0A1W2PQC6 194 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 MIF4GDA9UHW6 222 aaKnown RBP13□□□□□ -0.33
COL12A1-202ENST00000345356 CASP2P42575 452 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 LRRC36Q1X8D7 754 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 NBPF20Q3BBV1 942 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 APLFQ8IW19 511 aaPredicted RBP13□□□□□ -0.33
COL12A1-202ENST00000345356 TGFBRAP1Q8WUH2 860 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 NT5C1BQ96P26 610 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 SMARCAL1Q9NZC9 954 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 SEPT10Q9P0V9 454 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 AP5Z1O43299 807 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 RABGAP1LQ5R372 815 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 RINT1Q6NUQ1 792 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 EP400NLQ6ZTU2 488 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 EYA3Q99504 573 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 PUS7LQ9H0K6 701 aaKnown RBP13□□□□□ -0.33
COL12A1-202ENST00000345356 ATP6V0A4Q9HBG4 840 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 UBE2TQ9NPD8 197 aaPredicted RBP13□□□□□ -0.33
COL12A1-202ENST00000345356 PLEKHG2Q9H7P9 1386 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 PSMD14O00487 310 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 CFBP00751 764 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 PDIK1LQ8N165 341 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 ERP27Q96DN0 273 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 THAP11Q96EK4 314 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 ZSWIM5Q9P217 1185 aa13□□□□□ -0.33
COL12A1-202ENST00000345356 HNRNPCL1O60812 293 aaKnown RBP12.99□□□□□ -0.33
COL12A1-202ENST00000345356 SASH1O94885 1247 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 CARSP49589 748 aaKnown RBP12.99□□□□□ -0.33
COL12A1-202ENST00000345356 NEK2P51955 445 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 ARL6IP4Q66PJ3 421 aaKnown RBP12.99□□□□□ -0.33
COL12A1-202ENST00000345356 CYP4F11Q9HBI6 524 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 LIMA1Q9UHB6 759 aaKnown RBP12.99□□□□□ -0.33
COL12A1-202ENST00000345356 GCP02774 474 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 NR1I3Q14994 352 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 FIS1Q9Y3D6 152 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 CHRNA3P32297 505 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 CYTH1Q15438 398 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 SOS2Q07890 1332 aaPredicted RBP12.99□□□□□ -0.33
COL12A1-202ENST00000345356 PRPF3O43395 683 aaKnown RBP12.99□□□□□ -0.33
COL12A1-202ENST00000345356 ODR4Q5SWX8 454 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 WDR93Q6P2C0 686 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 CCDC124Q96CT7 223 aaKnown RBP12.99□□□□□ -0.33
COL12A1-202ENST00000345356 CEP19Q96LK0 163 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 GPR108Q9NPR9 543 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 TFCP2L1Q9NZI6 479 aa12.99□□□□□ -0.33
COL12A1-202ENST00000345356 BPIFB4P59827 614 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 CAV1Q03135 178 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 AOC3Q16853 763 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 FAM83BQ5T0W9 1011 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 FAM102BQ5T8I3 360 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 DDX17Q92841 729 aaKnown RBP12.98□□□□□ -0.33
COL12A1-202ENST00000345356 TBC1D23Q9NUY8 699 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 WDR62O43379 1518 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 RARS2Q5T160 578 aaKnown RBP12.98□□□□□ -0.33
COL12A1-202ENST00000345356 TRIM50Q86XT4 487 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 CCDC125Q86Z20 511 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 ESYT2A0FGR8 921 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 KIF28PB7ZC32 967 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 POLR2BP30876 1174 aaKnown RBP12.98□□□□□ -0.33
COL12A1-202ENST00000345356 RFC4P35249 363 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 LIFRP42702 1097 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 COPS2P61201 443 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 YWHAEP62258 255 aaKnown RBP12.98□□□□□ -0.33
COL12A1-202ENST00000345356 PCGF5Q86SE9 256 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 LRRN4CLQ8ND94 238 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 PUS3Q9BZE2 481 aaKnown RBP12.98□□□□□ -0.33
COL12A1-202ENST00000345356 ERVK-7P63135 1459 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 CTTNBP2Q8WZ74 1663 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 WDR46O15213 610 aaKnown RBP12.98□□□□□ -0.33
COL12A1-202ENST00000345356 KRT37O76014 449 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 BZW1Q7L1Q6 419 aaKnown RBP12.98□□□□□ -0.33
COL12A1-202ENST00000345356 SUPT20HQ8NEM7 779 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 PDP2Q9P2J9 529 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 PROSER3Q2NL68 480 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 FSCBQ5H9T9 825 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 MCUQ8NE86 351 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 NYXQ9GZU5 481 aa12.98□□□□□ -0.33
COL12A1-202ENST00000345356 MYCLP12524 364 aaPredicted RBP12.97□□□□□ -0.33
COL12A1-202ENST00000345356 MARK3P27448 753 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 NOP14P78316 857 aaKnown RBP12.97□□□□□ -0.33
COL12A1-202ENST00000345356 TBCKQ8TEA7 893 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 ALDH8A1Q9H2A2 487 aaPredicted RBP12.97□□□□□ -0.33
COL12A1-202ENST00000345356 NQO1P15559 274 aaKnown RBP12.97□□□□□ -0.33
COL12A1-202ENST00000345356 VHLP40337 213 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 MMGT1Q8N4V1 131 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 CHMP2BQ9UQN3 213 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 CCDC195A0A1B0GUA6 201 aa12.97□□□□□ -0.33
COL12A1-202ENST00000345356 CCDC22O60826 627 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms