RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 TRIM21P19474 475 aaKnown RBP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 NMT1P30419 496 aaKnown RBP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 COASYQ13057 564 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 PACS2Q86VP3 889 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 PANX2Q96RD6 677 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 NOC4LQ9BVI4 516 aaKnown RBP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 GPRC5CQ9NQ84 441 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 ADGRG1Q9Y653 693 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 MYH4Q9Y623 1939 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 DSG3P32926 999 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 KCNA1Q09470 495 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 TBC1D8BQ0IIM8 1120 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 RSRC2Q7L4I2 434 aaKnown RBP14.39□□□□□ -0.11
COL18A1-201ENST00000342220 CYFIP1Q7L576 1253 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 CLEC4DQ8WXI8 215 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 REEP2Q9BRK0 252 aa14.39□□□□□ -0.11
COL18A1-201ENST00000342220 HARSP12081 509 aaKnown RBP14.38□□□□□ -0.11
COL18A1-201ENST00000342220 CASP14P31944 242 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 KLK7P49862 253 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 FAM102BQ5T8I3 360 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 CDKAL1Q5VV42 579 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 CC2D1AQ6P1N0 951 aaPredicted RBP14.38□□□□□ -0.11
COL18A1-201ENST00000342220 GPR161Q8N6U8 529 aaKnown RBP14.38□□□□□ -0.11
COL18A1-201ENST00000342220 KIAA0895Q8NCT3 520 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 LENG9Q96B70 501 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 MXRA8Q9BRK3 442 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 PARD6BQ9BYG5 372 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 ACAD9Q9H845 621 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 PSME4Q14997 1843 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 DCAF8L1A6NGE4 600 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 TBC1D8O95759 1140 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 PBX1P40424 430 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 CYP2J2P51589 502 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 MRPS9P82933 396 aaKnown RBP14.38□□□□□ -0.11
COL18A1-201ENST00000342220 TKFCQ3LXA3 575 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 ODR4Q5SWX8 454 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 ETNPPLQ8TBG4 499 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 ASCC2Q9H1I8 757 aaPredicted RBP14.38□□□□□ -0.11
COL18A1-201ENST00000342220 CXorf56Q9H5V9 222 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 BTBD7Q9P203 1132 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 DNAH12Q6ZR08 3092 aa14.38□□□□□ -0.11
COL18A1-201ENST00000342220 POLR2AP24928 1970 aaKnown RBP14.38□□□□□ -0.11
COL18A1-201ENST00000342220 IQCA1LA6NCM1 817 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 LMAN1P49257 510 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 PDIA5Q14554 519 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 SWSAP1Q6NVH7 229 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 MYOCDQ8IZQ8 938 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 P2RX5Q93086 422 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 CNOT6LQ96LI5 555 aaKnown RBP14.37□□□□□ -0.11
COL18A1-201ENST00000342220 PDCD2LQ9BRP1 358 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 KIFC3Q9BVG8 833 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 PCIF1Q9H4Z3 704 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 KCNMB3Q9NPA1 279 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 GINS2Q9Y248 185 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 AFG3L2Q9Y4W6 797 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 C19orf81C9J6K1 198 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 FXR1P51114 621 aaKnown RBP eCLIP14.37□□□□□ -0.11
COL18A1-201ENST00000342220 GJC2Q5T442 439 aaPredicted RBP14.37□□□□□ -0.11
COL18A1-201ENST00000342220 CATSPERGQ6ZRH7 1159 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 NAP1L4Q99733 375 aaKnown RBP14.37□□□□□ -0.11
COL18A1-201ENST00000342220 TSG101Q99816 390 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 KLRC4O43908 158 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 MYBP10242 640 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 CYP11B2P19099 503 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 CASP5P51878 434 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 PGM5Q15124 567 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 TSR1Q2NL82 804 aaKnown RBP14.37□□□□□ -0.11
COL18A1-201ENST00000342220 FAM20AQ96MK3 541 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 NLRC4Q9NPP4 1024 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 STK17AQ9UEE5 414 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 KDM3AQ9Y4C1 1321 aa14.37□□□□□ -0.11
COL18A1-201ENST00000342220 GRIN3BO60391 1043 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 MFAP3LO75121 409 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 Q3C1V9 767 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 OTOP1Q7RTM1 612 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 ADSSL1Q8N142 457 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 GOLGA1Q92805 767 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 WRAP73Q9P2S5 460 aaPredicted RBP14.36□□□□□ -0.11
COL18A1-201ENST00000342220 GABBR1Q9UBS5 961 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 PUF60Q9UHX1 559 aaKnown RBP14.36□□□□□ -0.11
COL18A1-201ENST00000342220 GYPCP04921 128 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 MATR3P43243 847 aaKnown RBP eCLIP14.36□□□□□ -0.11
COL18A1-201ENST00000342220 COPB1P53618 953 aaKnown RBP14.36□□□□□ -0.11
COL18A1-201ENST00000342220 HUNKP57058 714 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 HERVK_113P62684 666 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 IGBP1P78318 339 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 MTERF2Q49AM1 385 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 ERO1BQ86YB8 467 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 TUBGCP2Q9BSJ2 902 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 SEPT9Q9UHD8 586 aaPredicted RBP14.36□□□□□ -0.11
COL18A1-201ENST00000342220 BRCA2P51587 3418 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 SLITRK3O94933 977 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 ABL1P00519 1130 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 ITGB3BPQ13352 177 aaPredicted RBP14.36□□□□□ -0.11
COL18A1-201ENST00000342220 ZNF569Q5MCW4 686 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 EGFL6Q8IUX8 553 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 ACRBPQ8NEB7 543 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 NSUN6Q8TEA1 469 aaKnown RBP14.36□□□□□ -0.11
COL18A1-201ENST00000342220 RABGGTAQ92696 567 aa14.36□□□□□ -0.11
COL18A1-201ENST00000342220 CTAGE1Q96RT6 745 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms