RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 SLF2Q8IX21 1173 aa15.73■□□□□ 0.11
CPSF7-201ENST00000340437 IPO4Q8TEX9 1081 aaKnown RBP15.73■□□□□ 0.11
CPSF7-201ENST00000340437 NUCKS1Q9H1E3 243 aaKnown RBP15.73■□□□□ 0.11
CPSF7-201ENST00000340437 DHX36Q9H2U1 1008 aaKnown RBP15.73■□□□□ 0.11
CPSF7-201ENST00000340437 AJAP1Q9UKB5 411 aaPredicted RBP15.73■□□□□ 0.11
CPSF7-201ENST00000340437 LRRN2O75325 713 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 AKAP3O75969 853 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 ZC2HC1CQ53FD0 456 aaPredicted RBP15.72■□□□□ 0.11
CPSF7-201ENST00000340437 GLE1Q53GS7 698 aaKnown RBP15.72■□□□□ 0.11
CPSF7-201ENST00000340437 ARSHQ5FYA8 562 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 PRR5LQ6MZQ0 368 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 ZNF473Q8WTR7 871 aaKnown RBP15.72■□□□□ 0.11
CPSF7-201ENST00000340437 TAF1DQ9H5J8 278 aaPredicted RBP15.72■□□□□ 0.11
CPSF7-201ENST00000340437 H2AFZP0C0S5 128 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 KRT13P13646 458 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 DHX9Q08211 1270 aaKnown RBP15.72■□□□□ 0.11
CPSF7-201ENST00000340437 ZCWPW2Q504Y3 356 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 H2AFVQ71UI9 128 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 B4GALNT4Q76KP1 1039 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 MYCT1Q8N699 235 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 PIK3R5Q8WYR1 880 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 INPP4AQ96PE3 977 aaPredicted RBP15.72■□□□□ 0.11
CPSF7-201ENST00000340437 THRAP3Q9Y2W1 955 aaKnown RBP15.72■□□□□ 0.11
CPSF7-201ENST00000340437 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.72■□□□□ 0.11
CPSF7-201ENST00000340437 GOLGA6L7A0A1B0GV03 622 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 PPP1R37O75864 691 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 VPS36Q86VN1 386 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 NLRP14Q86W24 1093 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 NAGPAQ9UK23 515 aa15.72■□□□□ 0.11
CPSF7-201ENST00000340437 ESYT2A0FGR8 921 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 FGGP02679 453 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 NMT1P30419 496 aaKnown RBP15.71■□□□□ 0.11
CPSF7-201ENST00000340437 HNRNPH1P31943 449 aaKnown RBP15.71■□□□□ 0.11
CPSF7-201ENST00000340437 SEMA3FQ13275 785 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 KIAA0825Q8IV33 1275 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 RBM46Q8TBY0 533 aaKnown RBP15.71■□□□□ 0.11
CPSF7-201ENST00000340437 MDM1Q8TC05 714 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 SPDYE3A6NKU9 549 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 GNA14O95837 355 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 PON1P27169 355 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 ITIH3Q06033 890 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 TBC1D16Q8TBP0 767 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 CEP63Q96MT8 703 aa15.71■□□□□ 0.11
CPSF7-201ENST00000340437 PGRMC1O00264 195 aaKnown RBP15.71■□□□□ 0.1
CPSF7-201ENST00000340437 FLOT1O75955 427 aa15.71■□□□□ 0.1
CPSF7-201ENST00000340437 TRIM49P0CI25 452 aa15.71■□□□□ 0.1
CPSF7-201ENST00000340437 TRIM49CP0CI26 452 aa15.71■□□□□ 0.1
CPSF7-201ENST00000340437 MDH1P40925 334 aaKnown RBP15.71■□□□□ 0.1
CPSF7-201ENST00000340437 MMS22LQ6ZRQ5 1243 aa15.71■□□□□ 0.1
CPSF7-201ENST00000340437 SELENOSQ9BQE4 189 aa15.71■□□□□ 0.1
CPSF7-201ENST00000340437 KDM3AQ9Y4C1 1321 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 DCDC2CA8MYV0 355 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 EPB41P11171 864 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 SF3B2Q13435 895 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 KNOP1Q1ED39 458 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 SLFN13Q68D06 897 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 PPP4R3AQ6IN85 833 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 ZC3H12CQ9C0D7 883 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 EPN3Q9H201 632 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 GANQ9H2C0 597 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 KCTD10Q9H3F6 313 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 USP21Q9UK80 565 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 NR3C1P04150 777 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 SERPINB2P05120 415 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 HLA-DOAP06340 250 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 ATP2B4P23634 1241 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 COG2Q14746 738 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 ZYXQ15942 572 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 PTGISQ16647 500 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 RNF14Q9UBS8 474 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 SCAF8Q9UPN6 1271 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 DDX39AO00148 427 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 EEF2P13639 858 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 MAGOHP61326 146 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 ARHGAP4P98171 946 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 SETQ01105 290 aaPredicted RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 IRF2BP2Q7Z5L9 587 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 WHAMMQ8TF30 809 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 MAGOHBQ96A72 148 aaKnown RBP15.7■□□□□ 0.1
CPSF7-201ENST00000340437 CCDC114Q96M63 670 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 SH2D3AQ9BRG2 576 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 LRRC4CQ9HCJ2 640 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 TMOD4Q9NZQ9 345 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 NR2E1Q9Y466 385 aa15.7■□□□□ 0.1
CPSF7-201ENST00000340437 ROBO3Q96MS0 1386 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 ROBO1Q9Y6N7 1651 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 FAM13AO94988 1023 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 GIT2Q14161 759 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 AADACL2Q6P093 401 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 CPLX4Q7Z7G2 160 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 GLG1Q92896 1179 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 RUSC1Q9BVN2 902 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 EDEM3Q9BZQ6 932 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 PCDHGC5Q9Y5F6 944 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 PHF20L1A8MW92 1017 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 HGSO14964 777 aaPredicted RBP15.69■□□□□ 0.1
CPSF7-201ENST00000340437 SLCO1A2P46721 670 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 GALCP54803 685 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 ERMNQ8TAM6 284 aa15.69■□□□□ 0.1
CPSF7-201ENST00000340437 MYCBPAPQ8TBZ2 947 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms