RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 WNT7AO00755 349 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 PSAPP07602 524 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 RSPH10BP0C881 870 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 GCFC2P16383 781 aaKnown RBP17.87■□□□□ 0.45
CLN3-201ENST00000333496 RPAINQ86UA6 219 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 ATP8B4Q8TF62 1192 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 HAS1Q92839 578 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 FTOQ9C0B1 505 aaKnown RBP eCLIP17.87■□□□□ 0.45
CLN3-201ENST00000333496 GABBR1Q9UBS5 961 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 SAMM50Q9Y512 469 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 IGSF9BQ9UPX0 1349 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 ZBTB42B2RXF5 422 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 CHMP2AO43633 222 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 HBP1O60381 514 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 CAND2O75155 1236 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 CTSHP09668 335 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 POTEDQ86YR6 584 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 FBXO18Q8NFZ0 1043 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 TCEAL9Q9UHQ7 104 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 EYSQ5T1H1 3165 aa17.87■□□□□ 0.45
CLN3-201ENST00000333496 ZBBXA8MT70 800 aa17.86■□□□□ 0.45
CLN3-201ENST00000333496 ZNF862O60290 1169 aa17.86■□□□□ 0.45
CLN3-201ENST00000333496 UGCGQ16739 394 aa17.86■□□□□ 0.45
CLN3-201ENST00000333496 FAM26DQ5JW98 314 aa17.86■□□□□ 0.45
CLN3-201ENST00000333496 TAF2Q6P1X5 1199 aa17.86■□□□□ 0.45
CLN3-201ENST00000333496 DNAJB3Q8WWF6 145 aa17.86■□□□□ 0.45
CLN3-201ENST00000333496 TNPO1Q92973 898 aaKnown RBP17.86■□□□□ 0.45
CLN3-201ENST00000333496 MTIF3Q9H2K0 278 aaKnown RBP17.86■□□□□ 0.45
CLN3-201ENST00000333496 CHD9Q3L8U1 2897 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 CHRNA1P02708 482 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 ACTN1P12814 892 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 SFNP31947 248 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 PBX2P40425 430 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 JAK3P52333 1124 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 CNKSR3Q6P9H4 555 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 TRMT1LQ7Z2T5 733 aaKnown RBP17.85■□□□□ 0.45
CLN3-201ENST00000333496 DEFB123Q8N688 67 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 FAM184AQ8NB25 1140 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 BBXQ8WY36 941 aaPredicted RBP17.85■□□□□ 0.45
CLN3-201ENST00000333496 FAM20AQ96MK3 541 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 NAP1L4Q99733 375 aaKnown RBP17.85■□□□□ 0.45
CLN3-201ENST00000333496 VAV3Q9UKW4 847 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 PCDHA2Q9Y5H9 948 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 SLC4A7Q9Y6M7 1214 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 CHD7Q9P2D1 2997 aa17.85■□□□□ 0.45
CLN3-201ENST00000333496 EML1O00423 815 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 TBX3O15119 743 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 MCM2P49736 904 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 MGAT3Q09327 533 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 MTHFD1LQ6UB35 978 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 MIER3Q7Z3K6 550 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 RDM1Q8NG50 284 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 PBX4Q9BYU1 374 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 COL1A2P08123 1366 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 MYO9BQ13459 2157 aa17.84■□□□□ 0.45
CLN3-201ENST00000333496 DNAJB2P25686 324 aa17.83■□□□□ 0.45
CLN3-201ENST00000333496 KLRC1P26715 233 aa17.83■□□□□ 0.45
CLN3-201ENST00000333496 PPP2R5CQ13362 524 aa17.83■□□□□ 0.45
CLN3-201ENST00000333496 SAFBQ15424 915 aaKnown RBP eCLIP17.83■□□□□ 0.45
CLN3-201ENST00000333496 PLEKHG4Q58EX7 1191 aa17.83■□□□□ 0.45
CLN3-201ENST00000333496 ZNF484Q5JVG2 852 aa17.83■□□□□ 0.45
CLN3-201ENST00000333496 CKAP2LQ8IYA6 745 aa17.83■□□□□ 0.45
CLN3-201ENST00000333496 DBF4BQ8NFT6 615 aa17.83■□□□□ 0.45
CLN3-201ENST00000333496 TTYH1Q9H313 450 aaPredicted RBP17.83■□□□□ 0.45
CLN3-201ENST00000333496 FOXP1Q9H334 677 aaPredicted RBP17.83■□□□□ 0.45
CLN3-201ENST00000333496 MTMR10Q9NXD2 777 aa17.83■□□□□ 0.45
CLN3-201ENST00000333496 BAIAP3O94812 1187 aa17.83■□□□□ 0.44
CLN3-201ENST00000333496 FAM49AQ9H0Q0 323 aaPredicted RBP17.83■□□□□ 0.44
CLN3-201ENST00000333496 SMIM35A0A1B0GVV1 85 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 KIF28PB7ZC32 967 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 STBD1O95210 358 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 ATP2A2P16615 1042 aaKnown RBP17.82■□□□□ 0.44
CLN3-201ENST00000333496 RABGGTBP53611 331 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 WDR5P61964 334 aaKnown RBP17.82■□□□□ 0.44
CLN3-201ENST00000333496 PRKCEQ02156 737 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 SPIRE1Q08AE8 756 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 MKRN4PQ13434 485 aaPredicted RBP17.82■□□□□ 0.44
CLN3-201ENST00000333496 RSPH3Q86UC2 560 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 FAM161BQ96MY7 647 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 CDY2AQ9Y6F7 541 aa17.82■□□□□ 0.44
CLN3-201ENST00000333496 ABHD14A-ACY1A0A1B0GW23 586 aa17.81■□□□□ 0.44
CLN3-201ENST00000333496 C22orf31O95567 290 aa17.81■□□□□ 0.44
CLN3-201ENST00000333496 OATP04181 439 aa17.81■□□□□ 0.44
CLN3-201ENST00000333496 TMEM62Q0P6H9 643 aa17.81■□□□□ 0.44
CLN3-201ENST00000333496 ZNF697Q5TEC3 545 aa17.81■□□□□ 0.44
CLN3-201ENST00000333496 FAM167AQ96KS9 214 aa17.81■□□□□ 0.44
CLN3-201ENST00000333496 SEMA6BQ9H3T3 888 aa17.81■□□□□ 0.44
CLN3-201ENST00000333496 YBX2Q9Y2T7 364 aaKnown RBP17.81■□□□□ 0.44
CLN3-201ENST00000333496 ARID2Q68CP9 1835 aa17.81■□□□□ 0.44
CLN3-201ENST00000333496 ATP2B1P20020 1258 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 GJB2P29033 226 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 DEFB103AP81534 67 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 MRPS6P82932 125 aaKnown RBP17.8■□□□□ 0.44
CLN3-201ENST00000333496 IKBKEQ14164 716 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 SLFN12Q8IYM2 578 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 KIAA0319LQ8IZA0 1049 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 BANK1Q8NDB2 785 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 PHOSPHO2Q8TCD6 241 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 TIFAQ96CG3 184 aa17.8■□□□□ 0.44
CLN3-201ENST00000333496 MTMR9Q96QG7 549 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms