RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 THAP9Q9H5L6 903 aa11□□□□□ -0.65
CHD3-201ENST00000330494 PDZD4Q76G19 769 aaPredicted RBP11□□□□□ -0.65
CHD3-201ENST00000330494 DNAAF3Q8N9W5 541 aa11□□□□□ -0.65
CHD3-201ENST00000330494 TYW1Q9NV66 732 aaKnown RBP11□□□□□ -0.65
CHD3-201ENST00000330494 BAIAP2L1Q9UHR4 511 aa11□□□□□ -0.65
CHD3-201ENST00000330494 FOXN1O15353 648 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 SERPING1P05155 500 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 PTPREP23469 700 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 KIF11P52732 1056 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 SLC12A1Q13621 1099 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 TSNAXIP1Q2TAA8 658 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 PPRC1Q5VV67 1664 aaKnown RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 TROVE2P10155 538 aaKnown RBP eCLIP10.99□□□□□ -0.65
CHD3-201ENST00000330494 GCLMP48507 274 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 PRELPP51888 382 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 TRIM68Q6AZZ1 485 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 CATSPER4Q7RTX7 472 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 DGKHQ86XP1 1220 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 VCXQ9H320 206 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 CAPN7Q9Y6W3 813 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 ATG9AQ7Z3C6 839 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 HPS3Q969F9 1004 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 RPGRIP1Q96KN7 1286 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 JPH2Q9BR39 696 aaPredicted RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 ADAMTS1Q9UHI8 967 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 FEM1BQ9UK73 627 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 OVOS2A0A0G2JMS6 1433 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 OVOS2A0A0J9YW53 1432 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 OVOS2Q6IE36 1432 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 WDR91A4D1P6 747 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 SRGAP2O75044 1071 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 HEXIM1O94992 359 aaKnown RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 MYO1EQ12965 1108 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 TMED2Q15363 201 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 CCDC68Q9H2F9 335 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 RNF146Q9NTX7 359 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 MAP2P11137 1827 aaKnown RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 KIF28PB7ZC32 967 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 INHBAP08476 426 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 ZKSCAN8Q15776 578 aaPredicted RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 SMAD1Q15797 465 aaKnown RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 STXBP2Q15833 593 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 RCSD1Q6JBY9 416 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 TOGARAM2Q6ZUX3 1019 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 MB21D2Q8IYB1 491 aaPredicted RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 CDC23Q9UJX2 597 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 ANAPC5Q9UJX4 755 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 hCG_1984214I3L0E3 225 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 ZBTB24O43167 697 aaPredicted RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 NDUFA10O95299 355 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 ARHGAP25P42331 645 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 SESN3P58005 492 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 C10orf76Q5T2E6 689 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 RWDD4Q6NW29 188 aaKnown RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 ZNF713Q8N859 430 aaPredicted RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 CAPS2Q9BXY5 557 aa10.99□□□□□ -0.65
CHD3-201ENST00000330494 RPAP3Q9H6T3 665 aaPredicted RBP10.99□□□□□ -0.65
CHD3-201ENST00000330494 RNF40O75150 1001 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 BAG2O95816 211 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 ARHGAP4P98171 946 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 SATB1Q01826 763 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 QRICH1Q2TAL8 776 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 MYLK4Q86YV6 388 aaPredicted RBP10.98□□□□□ -0.65
CHD3-201ENST00000330494 ENOX1Q8TC92 643 aaKnown RBP10.98□□□□□ -0.65
CHD3-201ENST00000330494 SAAL1Q96ER3 474 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 GABBR1Q9UBS5 961 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.98□□□□□ -0.65
CHD3-201ENST00000330494 LRRIQ1Q96JM4 1722 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 ZNF233A6NK53 670 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 ZNF500O60304 480 aaPredicted RBP10.98□□□□□ -0.65
CHD3-201ENST00000330494 CASP2P42575 452 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 R3HDM1Q15032 1099 aaKnown RBP10.98□□□□□ -0.65
CHD3-201ENST00000330494 VSTM4Q8IW00 320 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 SLC17A8Q8NDX2 589 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 HDAC11Q96DB2 347 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 MIS12Q9H081 205 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 SH3GLB2Q9NR46 395 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 PRKAG2Q9UGJ0 569 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 MAP7D3Q8IWC1 876 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 MMP19Q99542 508 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 DAAM1Q9Y4D1 1078 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 LRRD1A4D1F6 860 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 GOLGA8KD6RF30 607 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 MCF2LO15068 1137 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 MED7O43513 233 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 PDE1BQ01064 536 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 SIX6OS1Q8N1H7 587 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 COASYQ13057 564 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 CCDC38Q502W7 563 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 PADI6Q6TGC4 694 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 STOX1Q6ZVD7 989 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 GDAP1Q8TB36 358 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 PNMA3Q9UL41 463 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 CDHR2Q9BYE9 1310 aa10.98□□□□□ -0.65
CHD3-201ENST00000330494 PIK3R2O00459 728 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 CASQ2O14958 399 aaPredicted RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 GFPT1Q06210 699 aaPredicted RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 PODNQ7Z5L7 613 aa10.97□□□□□ -0.65
CHD3-201ENST00000330494 SRBD1Q8N5C6 995 aaKnown RBP10.97□□□□□ -0.65
CHD3-201ENST00000330494 VCX3BQ9H321 246 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms