RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 HIPK4Q8NE63 616 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 IGDCC4Q8TDY8 1250 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 PUS7LQ9H0K6 701 aaKnown RBP4.63□□□□□ -1.67
HMGB1-201ENST00000326004 ZMAT4Q9H898 229 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 BTBD7Q9P203 1132 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 USP36Q9P275 1121 aaKnown RBP4.63□□□□□ -1.67
HMGB1-201ENST00000326004 IRAK3Q9Y616 596 aa4.63□□□□□ -1.67
HMGB1-201ENST00000326004 TCAF2A6NFQ2 919 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 RASSF10A6NK89 507 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 NFIBO00712 420 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 PPM1GO15355 546 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-201ENST00000326004 RAB11FIP3O75154 756 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 CYP7B1O75881 506 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 PTX3P26022 381 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-201ENST00000326004 GUCY2FP51841 1108 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 ITGA1P56199 1179 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 CAP1Q01518 475 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 PFKPQ01813 784 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 BROXQ5VW32 411 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 ESRP1Q6NXG1 681 aaKnown RBP4.62□□□□□ -1.67
HMGB1-201ENST00000326004 LHFPL2Q6ZUX7 228 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 HDGFL2Q7Z4V5 671 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-201ENST00000326004 RTN4RL1Q86UN2 441 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-201ENST00000326004 POU5F2Q8N7G0 328 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 TTLL6Q8N841 843 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 LINC00482Q8N8I6 264 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 DTX3Q8N9I9 347 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 KYQ8NBH2 561 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 CALML6Q8TD86 181 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 CLIC6Q96NY7 704 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 FOXB1Q99853 325 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 GORASP1Q9BQQ3 440 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 C11orf84Q9BUA3 381 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-201ENST00000326004 INCENPQ9NQS7 918 aa4.62□□□□□ -1.67
HMGB1-201ENST00000326004 UBA6A0AVT1 1052 aaPredicted RBP4.61□□□□□ -1.67
HMGB1-201ENST00000326004 PRAMEF22A3QJZ6 481 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 K7ESF4 209 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 TSPAN15O95858 294 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 HMGB1P09429 215 aaKnown RBP4.61□□□□□ -1.67
HMGB1-201ENST00000326004 LIMS1P48059 325 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 ALDH6A1Q02252 535 aaKnown RBP4.61□□□□□ -1.67
HMGB1-201ENST00000326004 ADAM9Q13443 819 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 SKIDA1Q1XH10 827 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 TTC38Q5R3I4 469 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 PRAMEF18Q5VWM3 479 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 OGFOD2Q6N063 350 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 TMC5Q6UXY8 1006 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 LIPIQ6XZB0 460 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 ATG14Q6ZNE5 492 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 FRMD7Q6ZUT3 714 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 CILP2Q8IUL8 1156 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 PHYKPLQ8IUZ5 450 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 TMEFF1Q8IYR6 380 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 C7orf31Q8N865 590 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 CLRN3Q8NCR9 226 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 FOXRED1Q96CU9 486 aaPredicted RBP4.61□□□□□ -1.67
HMGB1-201ENST00000326004 MAML3Q96JK9 1138 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 FMNL2Q96PY5 1086 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 ZDHHC5Q9C0B5 715 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 SLC39A2Q9NP94 309 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 GALNT8Q9NY28 637 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 DDX56Q9NY93 547 aaKnown RBP4.61□□□□□ -1.67
HMGB1-201ENST00000326004 ARHGAP20Q9P2F6 1191 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 WASF3Q9UPY6 502 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 PMF1-BGLAPU3KQ54 211 aa4.61□□□□□ -1.67
HMGB1-201ENST00000326004 RFXAPO00287 272 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 MPIG6BO95866 241 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 PRLP01236 227 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 CHGBP05060 677 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 MC4RP32245 332 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 HTRA3P83110 453 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 EXOSC10Q01780 885 aaKnown RBP4.6□□□□□ -1.67
HMGB1-201ENST00000326004 ROM1Q03395 351 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 TIGD7Q6NT04 549 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-201ENST00000326004 CNKSR3Q6P9H4 555 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 DPP8Q6V1X1 898 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-201ENST00000326004 FERMT3Q86UX7 667 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 FAM129CQ86XR2 697 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 WDR48Q8TAF3 677 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 RTF1Q92541 710 aaKnown RBP4.6□□□□□ -1.67
HMGB1-201ENST00000326004 ERCC4Q92889 916 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-201ENST00000326004 NOX5Q96PH1 765 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 MENTQ9BUN1 341 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 BTBD2Q9BX70 525 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 UCKL1Q9NWZ5 548 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 RBPJLQ9UBG7 517 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 KCNG1Q9UIX4 513 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 CNOT6Q9ULM6 557 aaKnown RBP4.6□□□□□ -1.67
HMGB1-201ENST00000326004 NOC2LQ9Y3T9 749 aaKnown RBP4.6□□□□□ -1.67
HMGB1-201ENST00000326004 WASHC2CQ9Y4E1 1318 aa4.6□□□□□ -1.67
HMGB1-201ENST00000326004 KDM1AO60341 852 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 MAFO75444 373 aaPredicted RBP4.59□□□□□ -1.67
HMGB1-201ENST00000326004 PRKD3O94806 890 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 FBXO21O94952 628 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 KRT1P04264 644 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 PDGFRBP09619 1106 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 HSP90B1P14625 803 aaKnown RBP4.59□□□□□ -1.67
HMGB1-201ENST00000326004 ECE1P42892 770 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 EVA1CP58658 441 aa4.59□□□□□ -1.67
HMGB1-201ENST00000326004 FAM50AQ14320 339 aaKnown RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms