RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 FAM133AQ8N9E0 248 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 FGD4Q96M96 766 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 TMEM60Q9H2L4 133 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 USP42Q9H9J4 1324 aaKnown RBP12.4□□□□□ -0.42
VPS39-201ENST00000318006 GYG2O15488 501 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 GPC4O75487 556 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 MT-ND3P03897 115 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 NR2F2P24468 414 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 RCAN1P53805 252 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 ZNF772Q68DY9 489 aaPredicted RBP12.4□□□□□ -0.42
VPS39-201ENST00000318006 ATG9AQ7Z3C6 839 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 DTNBP1Q96EV8 351 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 THOC1Q96FV9 657 aaKnown RBP12.4□□□□□ -0.42
VPS39-201ENST00000318006 CHMP6Q96FZ7 201 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 OLFM3Q96PB7 478 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 CYTH2Q99418 400 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 KIF2CQ99661 725 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 ADAMTS13Q76LX8 1427 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 PPP1R37O75864 691 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 CPDO75976 1380 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 AFPP02771 609 aaKnown RBP12.4□□□□□ -0.42
VPS39-201ENST00000318006 PTPREP23469 700 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 CPS1P31327 1500 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 FMR1NBQ8N0W7 255 aaPredicted RBP12.4□□□□□ -0.42
VPS39-201ENST00000318006 PPM1KQ8N3J5 372 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 SH3RF3Q8TEJ3 882 aaPredicted RBP12.4□□□□□ -0.42
VPS39-201ENST00000318006 WDR11Q9BZH6 1224 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 SH3GLB2Q9NR46 395 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 NOD1Q9Y239 953 aa12.4□□□□□ -0.42
VPS39-201ENST00000318006 NSFP46459 744 aaKnown RBP12.4□□□□□ -0.43
VPS39-201ENST00000318006 PPP2R5CQ13362 524 aa12.4□□□□□ -0.43
VPS39-201ENST00000318006 SPARCL1Q14515 664 aa12.4□□□□□ -0.43
VPS39-201ENST00000318006 RESP18Q5W5W9 173 aa12.4□□□□□ -0.43
VPS39-201ENST00000318006 ZBTB8OSQ8IWT0 167 aa12.4□□□□□ -0.43
VPS39-201ENST00000318006 ANLNQ9NQW6 1124 aa12.4□□□□□ -0.43
VPS39-201ENST00000318006 C1orf112Q9NSG2 853 aa12.4□□□□□ -0.43
VPS39-201ENST00000318006 CYP2D6P10635 497 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 YWHAEP62258 255 aaKnown RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 DMP1Q13316 513 aaPredicted RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 KAZNQ674X7 775 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 SLC30A9Q6PML9 568 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 FOXP4Q8IVH2 680 aaPredicted RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 DHX40Q8IX18 779 aaKnown RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 OSBPL9Q96SU4 736 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 ZNF577Q9BSK1 485 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 CCDC68Q9H2F9 335 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 NDST4Q9H3R1 872 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 OVOS2A0A0G2JMS6 1433 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 GAP43P17677 238 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 PLCG1P19174 1290 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 HOXA7P31268 230 aaPredicted RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 CORO7P57737 925 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 LRRC41Q15345 812 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 GRAMD4Q6IC98 578 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 CCDC127Q96BQ5 260 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 WDR24Q96S15 920 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 LY9Q9HBG7 655 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 PNMA6FA0A0J9YX94 578 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 PODXLO00592 558 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 EIF3HO15372 352 aaKnown RBP eCLIP12.39□□□□□ -0.43
VPS39-201ENST00000318006 PRPF6O94906 941 aaKnown RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 MMP10P09238 476 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 UBXN2AP68543 259 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 HDLBPQ00341 1268 aaKnown RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 SNX1Q13596 522 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 SYDE2Q5VT97 1194 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 TBC1D9BQ66K14 1250 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 JADE1Q6IE81 842 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 SERPINI1Q99574 410 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 GOLPH3LQ9H4A5 285 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 CA8P35219 290 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 STAT2P52630 851 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 RAD23BP54727 409 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 CCZ1BP86790 482 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 CCZ1P86791 482 aaPredicted RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 PDE1BQ01064 536 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 KRT81Q14533 505 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 E4F1Q66K89 784 aaPredicted RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 DCP1AQ9NPI6 582 aaPredicted RBP12.39□□□□□ -0.43
VPS39-201ENST00000318006 MAD1L1Q9Y6D9 718 aa12.39□□□□□ -0.43
VPS39-201ENST00000318006 MROH1Q8NDA8 1641 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 PPLO60437 1756 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 STAM2O75886 525 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 EEF1DP29692 281 aaKnown RBP12.38□□□□□ -0.43
VPS39-201ENST00000318006 SCARF1Q14162 830 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 ENAHQ8N8S7 591 aaPredicted RBP12.38□□□□□ -0.43
VPS39-201ENST00000318006 RUBCNQ92622 972 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 SCYL1Q96KG9 808 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 EPN3Q9H201 632 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 ECT2Q9H8V3 914 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 ETNK1Q9HBU6 452 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 GEMIN8Q9NWZ8 242 aaKnown RBP12.38□□□□□ -0.43
VPS39-201ENST00000318006 P4HA1P13674 534 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 CNGA1P29973 690 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 CCDC125Q86Z20 511 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 RNF34Q969K3 372 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 NRBF2Q96F24 287 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 MASTLQ96GX5 879 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 CCDC138Q96M89 665 aa12.38□□□□□ -0.43
VPS39-201ENST00000318006 PLA2G12BQ9BX93 195 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms