RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 HAUS5O94927 633 aa18.64■□□□□ 0.58
SYNPO-201ENST00000307662 TMPRSS15P98073 1019 aa18.64■□□□□ 0.58
SYNPO-201ENST00000307662 WDR24Q96S15 920 aa18.64■□□□□ 0.58
SYNPO-201ENST00000307662 VIPAS39Q9H9C1 493 aa18.64■□□□□ 0.58
SYNPO-201ENST00000307662 G3BP2Q9UN86 482 aaKnown RBP18.64■□□□□ 0.58
SYNPO-201ENST00000307662 HSPA8P11142 646 aaKnown RBP18.64■□□□□ 0.57
SYNPO-201ENST00000307662 WDR75Q8IWA0 830 aaKnown RBP18.64■□□□□ 0.57
SYNPO-201ENST00000307662 CCDC124Q96CT7 223 aaKnown RBP18.64■□□□□ 0.57
SYNPO-201ENST00000307662 WDR11Q9BZH6 1224 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 NOD1Q9Y239 953 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 ARHGAP31Q2M1Z3 1444 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 KRT37O76014 449 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 KCNJ6P48051 423 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 GRAMD4Q6IC98 578 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 UNC13DQ70J99 1090 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 CALR3Q96L12 384 aaKnown RBP18.64■□□□□ 0.57
SYNPO-201ENST00000307662 SH3GL3Q99963 347 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 PARVGQ9HBI0 331 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 IVNS1ABPQ9Y6Y0 642 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 SYNJ2BP-COX16A0A087WUM0 186 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 S100BP04271 92 aaPredicted RBP18.64■□□□□ 0.57
SYNPO-201ENST00000307662 DYNLL1P63167 89 aaKnown RBP18.64■□□□□ 0.57
SYNPO-201ENST00000307662 CALN1Q9BXU9 219 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 ETNK1Q9HBU6 452 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 COX16Q9P0S2 106 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 STK36Q9NRP7 1315 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 PRAMEF22A3QJZ6 481 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 COPEO14579 308 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 C1orf146Q5VVC0 180 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 SRRM1Q8IYB3 904 aaKnown RBP18.64■□□□□ 0.57
SYNPO-201ENST00000307662 LARGE2Q8N3Y3 721 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 DNAAF3Q8N9W5 541 aa18.64■□□□□ 0.57
SYNPO-201ENST00000307662 RASSF10A6NK89 507 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 SPOPLQ6IQ16 392 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 KMT5AQ9NQR1 393 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 GSTA4O15217 222 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 NCK2O43639 380 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 RAD23BP54727 409 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 CDR2Q01850 454 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 OLFM3Q96PB7 478 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 GJB4Q9NTQ9 266 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 FIS1Q9Y3D6 152 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 DLGAP5Q15398 846 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 TGS1Q96RS0 853 aaKnown RBP18.63■□□□□ 0.57
SYNPO-201ENST00000307662 TRIM15Q9C019 465 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 SUGCTQ9HAC7 445 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 NRBP2Q9NSY0 501 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 CLEC11AQ9Y240 323 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 TEX33O43247 280 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 ATP1A1P05023 1023 aaKnown RBP18.63■□□□□ 0.57
SYNPO-201ENST00000307662 SH3GLB2Q9NR46 395 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 KRT82Q9NSB4 513 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 PNMA2Q9UL42 364 aa18.63■□□□□ 0.57
SYNPO-201ENST00000307662 LOC102724159A0A0B4J2E5 919 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 TTLL1O95922 423 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 PRCPP42785 496 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 PWP2Q15269 919 aaKnown RBP18.62■□□□□ 0.57
SYNPO-201ENST00000307662 PROM2Q8N271 834 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.62■□□□□ 0.57
SYNPO-201ENST00000307662 M0QZ92 97 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 PRR29P0C7W0 189 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 AP2B1P63010 937 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 GUCY1A3Q02108 690 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 IFRD2Q12894 506 aaPredicted RBP18.62■□□□□ 0.57
SYNPO-201ENST00000307662 PI16Q6UXB8 463 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 CCNYQ8ND76 341 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 ANKRD36BP1Q96IX9 119 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 ASAP1Q9ULH1 1129 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 APOBEC2Q9Y235 224 aaKnown RBP18.62■□□□□ 0.57
SYNPO-201ENST00000307662 FGD4Q96M96 766 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 TTC25Q96NG3 672 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 LOC102724428A0A0B4J2F2 783 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 MED7O43513 233 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 OATP04181 439 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 MCF2P10911 925 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 KRT10P13645 584 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 ARL4CP56559 192 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 SIK1P57059 783 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 CCZ1BP86790 482 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 CCZ1P86791 482 aaPredicted RBP18.62■□□□□ 0.57
SYNPO-201ENST00000307662 EPN3Q9H201 632 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 FAM96AQ9H5X1 160 aa18.62■□□□□ 0.57
SYNPO-201ENST00000307662 ZBBXA8MT70 800 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 SORBS3O60504 671 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 CASP1P29466 404 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 TRMT10CQ7L0Y3 403 aaKnown RBP18.61■□□□□ 0.57
SYNPO-201ENST00000307662 GJA3Q9Y6H8 435 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 PPP1R37O75864 691 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 TJP3O95049 919 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.61■□□□□ 0.57
SYNPO-201ENST00000307662 ATP6V0A1Q93050 837 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 CCDC17Q96LX7 622 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 TMEM94Q12767 1356 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 ERBB3P21860 1342 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 TET3O43151 1660 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 TTC26A0AVF1 554 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 TRIM66O15016 1216 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 HSPA4LO95757 839 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 BRAFP15056 766 aa18.61■□□□□ 0.57
SYNPO-201ENST00000307662 PDE6BP35913 854 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms